Job Description P35235 Confidence 100.00% Date Wed Jul 10 14:25:20 BST 2013 Rank 50 Aligned Residues 171 % Identity 18% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																													.																.
Query SS confidence																																													.																.
Query Sequence		S	R	R	W	F	H	P	N	I	T	G	V	E	A	E	N	L	L	L	T	R	G	V	D	G	S	F	L	A	R	P	S	K	S	N	P	G	D	F	T	L	S	V	.	R	R	N	G	A	V	T	H	I	K	I	Q	N	T	G	.
Query Conservation																																													.																.
Alig confidence								.															.																						.																.
Template Conservation								.															.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	.	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K
Template Known Secondary structure				T	T			.												T	T	S	.		T	T								S	S		T	T										T	T											S
Template Predicted Secondary structure								.															.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
								61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	Y	Y	D	L	Y	G	G	E	K	F	A	T	L	A	E	L	V	Q	Y	Y	M	E	H	H	G	Q	L	K	E	K	N	G	D	V	I	E	L	K	Y	P	L	N	C	A	D	P	T	S	E	R	W	F	H
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	N	K	I	R	L	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	T	S	N	E	K	F	K	A
Template Known Secondary structure		S	S	T	T	S			S					T	T				S	S								T										.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S	T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.															.	100	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																.											.	.	.
Query SS confidence																.											.	.	.
Query Sequence		G	H	L	S	G	K	E	A	E	K	L	L	T	E	.	K	G	K	H	G	S	F	L	V	R	.	.	.	E	S	Q	S	H	P	G	D	F	V	L	S	V	R	T	G	D	D	K	G	E	S	N	D	G	K	S	K	V	T	H	V
Query Conservation																.											.	.	.
Alig confidence			.	.												.											.	.	.																		.	.	.	.	.	.	.	.
Template Conservation			.	.																																											.	.	.	.	.	.	.	.
Template Sequence		G	.	.	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L	I	F	K	L	N	A	.	.	.	.	.	.	.	.	E	S	K	L	Y	I	W
Template Known Secondary structure		S	.	.																	T	T										T	T	S	T	T								S	S	T	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure			.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		109			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.									.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	C	Q	E	L	K	Y	D	V	G	G	G	E	R	F	D	S	L	T	D	L	V	E	H	Y	K	K	N
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		N	V	K	L	T	H	T	G	F	F	L	.	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T	L
Template Known Secondary structure							S	S	S				.	T	T				S	S
Template Predicted Secondary structure													.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D