Job Description P35235 Confidence 99.96% Date Wed Jul 10 14:25:20 BST 2013 Rank 53 Aligned Residues 165 % Identity 21% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	S	R	R	W	F	H	P	N	I	T	G	V	E	A	E	N	L	L	L	T	R	G	V	D	G	S	F	L	A	R	P	S	K	S	N	P	G	D	F	T	L	S	V	R	R	N	G	A	V	T	H	I	K	I	Q	N	T	G
Query Conservation
Alig confidence										.														.	.											.
Template Conservation										.														.	.											.
Template Sequence		F	Y	K	H	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H
Template Known Secondary structure		G	G	G	S	T	T			.														.	.	S	S									.	S	S	T	T										T	T
Template Predicted Secondary structure										.														.	.											.
Template SS confidence
		789	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.			810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	Y	D	L	Y	G	G	E	K	F	A	T	L	A	E	L	V	Q	Y	Y	M	E	H	H	G	Q	L	K	E	K	N	G	D	V	I	E	L	K	Y	P	L	N	C	A	D	P	T	S	E	R	W	F	H	G	H	L	S	G	K
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	K	A	H	A	K	Y	F	N	S	P	E	.	.
Template Known Secondary structure		S	S					T	T				S	S								T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	T	T	B		S		T	T	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		845	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.																.	.	.	.	.	880	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		E	A	E	K	L	L	T	E	K	G	.	K	H	G	S	F	L	V	R	E	S	Q	S	H	P	G	D	F	V	L	S	V	R	T	G	D	D	K	G	E	S	N	D	G	K	S	K	V	T	H	V	M	I	R	C	Q	E	L	K	Y
Query Conservation												.
Alig confidence												.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	.	.	.	.	.	.	.	.	.	.	G	S	I	L	E	E	Y	I	G	V	S	D	M	L	T	Y
Template Known Secondary structure		T	S						T			S	S	S									S	S	S	T	T								S	.	.	.	.	.	.	.	.	.	.	S	S									S	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		888	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.											.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	G	G	G	E	R	F	D	S	L	T	D	L	V	E	H	Y	K	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		.	.	.	T	T				S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					938	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D