Job Description P35235 Confidence 100.00% Date Wed Jul 10 14:25:20 BST 2013 Rank 37 Aligned Residues 281 % Identity 38% Template c2qepA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase n2; PDBTitle: crystal structure of the d1 domain of ptprn2 (ia2beta) Resolution 2.50 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	S	K	L	A	E	T	T	D	K	V	K	Q	G	F	W	E	E	F	E	T	L	Q	Q	Q	E	C	K	L	L	Y	S	R	K	E	G	Q	R	Q	E	N	K	N	K	N	R	Y	K	N	I	L	P	F	D	H	T	R	V
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		H	M	I	L	S	Y	M	E	D	H	L	K	N	K	N	R	L	E	K	E	W	E	A	L	C	A	Y	Q	A	E	.	P	N	S	S	F	V	A	Q	R	E	E	N	V	P	K	N	R	S	L	A	V	L	T	Y	D	H	S	R	V
Template Known Secondary structure												T	T																		S	.	S				T	T	T	T	S	T	T	T	G	G	G		S		T	T					G	G	G
Template Predicted Secondary structure																																.
Template SS confidence
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.		.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	H	D	G	D	P	N	E	P	V	S	D	Y	I	N	A	N	I	I	M	P	E	F	E	T	K	C	N	N	S	K	P	K	K	S	Y	I	A	T	Q	G	C	L	Q	N	T	V	N	D	F	W	R	M	V	F	Q	E	N	S
Query Conservation
Alig confidence								.															.	.	.	.	.	.	.
Template Conservation								.															.	.	.	.	.	.	.
Template Sequence		L	L	K	A	E	N	.	S	H	S	H	S	D	Y	I	N	A	S	P	I	M	.	.	.	.	.	.	.	D	H	D	P	R	N	P	A	Y	I	A	T	Q	G	P	L	P	A	T	V	A	D	F	W	Q	M	V	W	E	S	G	C
Template Known Secondary structure		B			T	T	T	.		S	S	S			B		S						.	.	.	.	.	.	.	S	S		S	S	S		S									G	G	G											T	T
Template Predicted Secondary structure								.															.	.	.	.	.	.	.
Template SS confidence
		788	.	790	.	.	.		.	.	.	.	.	.	800	.	.	.	.	.	.	.								.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		R	V	I	V	M	T	T	K	E	V	E	R	G	K	S	K	C	V	K	Y	W	P	D	E	Y	A	L	K	E	Y	G	V	M	R	V	R	N	V	K	E	S	.	A	A	H	D	Y	T	L	R	E	L	K	L	S	K	V	G	Q	A
Query Conservation																																											.
Alig confidence																										.																	.															.	.	.	.
Template Conservation																										.																																.	.	.	.
Template Sequence		V	V	I	V	M	L	T	P	L	A	E	N	G	V	R	Q	C	Y	H	Y	W	P	D	E	.	G	S	N	L	Y	H	I	Y	E	V	N	L	V	S	E	H	I	W	C	E	D	F	L	V	R	S	F	Y	L	K	N	.	.	.	.
Template Known Secondary structure								S		S			T	T				S				S		S	S	.	S					T	T													T	T											.	.	.	.
Template Predicted Secondary structure																										.																																.	.	.	.
Template SS confidence
		840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.		.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Q	G	N	T	E	R	T	V	W	Q	Y	H	F	R	T	W	P	D	H	G	V	P	S	D	P	G	G	V	L	D	F	L	E	E	V	H	H	K	Q	E	S	I	V	D	A	G	P	V	V	V	H	C	S	A	G	I	G	R
Query Conservation
Alig confidence		.																																											.	.
Template Conservation		.																																											.	.
Template Sequence		.	L	Q	T	N	E	T	R	T	V	T	Q	F	H	F	L	S	W	Y	D	R	G	V	P	S	S	S	R	S	L	L	D	F	R	R	K	V	N	K	C	Y	R	G	.	.	R	S	C	P	I	I	V	H	C	S	D	G	A	G	R
Template Known Secondary structure		.	T	T	T	T												S			T	T	S			S																	S	S	.	.		S	S							S	S	S	S
Template Predicted Secondary structure		.																																											.	.
Template SS confidence
			895	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.			.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	T	F	I	V	I	D	I	L	I	D	I	I	R	E	K	G	V	D	C	D	I	D	V	P	K	T	I	Q	M	V	R	S	Q	R	S	G	M	V	Q	T	E	A	Q	Y	R	F	I	Y	M	A	V	Q	H	Y	I	E	T	L
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		S	G	T	Y	V	L	I	D	M	V	L	N	K	M	A	K	G	K	.	.	.	E	I	D	I	A	A	T	L	E	H	L	R	D	Q	R	P	G	M	V	Q	T	K	E	Q	F	E	F	A	L	T	A	V	A	E	E	V	N	A	I
Template Known Secondary structure																	T			.	.	.													T	T	S	T	T	S	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		952	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.				970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.
		530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1010	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D