 |
| Job Description | Q9Z0R4 | | Confidence | 96.55% | Date | Tue Jul 30 13:06:10 BST 2013 |
| Rank | 475 | Aligned Residues | 65 |
| % Identity | 22% | Template | c2vrgA_ |
| PDB info |
PDB header:transport | Chain: A: PDB Molecule:multiple coagulation factor deficiency protein 2; |
PDBTitle: structure of human mcfd2
|
| Resolution | UNK |
|
 |
|   |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
. | . | . | 40 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . |
|  |  |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | T | V | E | E | R | A | K | H | D | Q | Q | F | L | S | L | K | P | I | A | . |
G | F | I | T | G | D | Q | A | R | N | F | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | Q | S | G | L | P | Q | P | V | L | A | Q | I | W | A | L | A |
| Query Conservation |   |
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   | . |
|   |
|   |
|   |   |
|   |   |   |
| . | . | . | . | . | . | . | . | . | . |   |   |
|   |
|
|   |   |   |
|   |   |
|
|   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|   |
|
|   |
|   |   |   | . | . |
|   |   |   |
|   |
|   |
|
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
| Template Sequence |   |
M | S | P | Q | E | L | Q | L | H | Y | . |
. |
F | K | M | H | D | Y | D | G | N | N | L | L | D | G | L | E | L | S | T | A | I | T | H | V | H | K | E | E | G | S | E | Q | A | P | L | M | S | E | D | E | L | I | N | I | I | D | G | V |
| Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  | . | . |  |  | T | T |
|
| S |
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  | S |
| S | S |
| S | S | S |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
67 | . | . | 70 | . | . | . | . | . | . | |
|
. | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |
|   |
|   |   |
|
|
|
|
66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
| Predicted Secondary structure |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
. |
. |
. |
. |
D | M | N | N | D | G | R | M | D | Q | V | E | F | S | I | A | M | K |
| Query Conservation |   |
. | . | . | . |
|   |   |   |   |
|   |
|   |   |   |
|
|   |   |
|
|   |
| Alig confidence |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|   |
|
| Template Sequence |   |
L | R | D | D | D | K | N | N | D | G | Y | I | D | Y | A | E | F | A | K | S | L | Q |
| Template Known Secondary structure |   |
 |  | T | T |
| T | T | S | S | S | S |
|
|  |  |  |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|