Job Description Q9Z0R4 Confidence 98.12% Date Tue Jul 30 13:06:10 BST 2013 Rank 305 Aligned Residues 314 % Identity 8% Template c2q13A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:dcc-interacting protein 13 alpha; PDBTitle: crystal structure of bar-ph domain of appl1 Resolution 2.05 Å

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		1226	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.							.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	.	.	.	.	.	.	K	P	L	T	E	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	A	T	A	I	S	N	Y	M	N	Q	L	Y	Q	A	M	H	R	I	Y	D	A	Q	N	E	L	S	A	A	T	H	L	T	S	K	L	L	K	E	Y	E	K	Q	R	F	P	L	D	E	V	M	S	S	T	L	Q	Q	F	S
Template Known Secondary structure																																									T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	M	C	N	I	K	L	L	K	A	L	R	V	R	K	K	M	S	G	E	K	M	P	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	C	Q	L	N	G	A	A	L	I	Q	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	I	D	E	L	S	S	C	H	A	V	L	S	T	Q	L	A	D	A	M	M	F	P	I	T	Q	F	K	E	R	D	L	K	E	I	L	T	L	K	E	V	F	Q	I	A	S	N	D	H	D	A	A	I	N	R	Y	S	R	L
Template Known Secondary structure																						T										T																												T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		1340	.	.				.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		T	D	E	.	.	.	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N	I	L	E	N	T	P	E	N	H	P	D	H
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		S	K	K	R	E	N	D	K	V	K	Y	E	V	T	E	D	V	Y	T	S	R	K	K	Q	H	Q	T	M	M	H	Y	F	C	A	L	N	T	L	Q	Y	K	K	K	I	A	L	L	E	P	L	L	G	Y	M	Q	A	Q	I	S	F
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
															1397	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		F	K	M	G	S	E	N	L	N	E	Q	L	E	E	F	L	A	N	I	G	T	S	V	Q	N	V	R	R	E	M	D	S	D	I	E	T	M	Q	Q	T	I	E	D	L	E	V	A	S	D	P	.	.	.	.	.	L	Y	V	P	D
Template Known Secondary structure									S																																									G	G	.	.	.	.	.	G	S	S	S	S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.
		1444	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K	L	Y	K	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N
Query Conservation
Alig confidence																							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	P	T	K	F	P	V	N	R	N	L	T	R	K	A	G	Y	L	N	A	.	R	T	W	D	R	Q	F	Y	F	T	Q	G	G	N	L	M	S	Q	A	R	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	S							S									.												T	T							S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		1504	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.		.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	I	F	H	I	S	.	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A
Query Conservation																																			.
Alig confidence		.	.	.	.																														.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	A	G	G	L	A	M	D	I	D	N	C	S	V	M	A	V	D	C	E	D	R	R	Y	C	F	Q	I	T	S	F	D	G	K	K	S	S	I	L	Q	A	E	S	K	K	D	H	E	E	W	I	C	T	I	N	N	I
Template Known Secondary structure		.	.	.	.	S								T	T									T	T		S	S							T	T	S		B							S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		1563	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		374	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D