Job Description Q9Z0R4 Confidence 97.69% Date Tue Jul 30 13:06:10 BST 2013 Rank 337 Aligned Residues 141 % Identity 13% Template c2hpkA_ PDB info PDB header:luminescent protein Chain: A: PDB Molecule:photoprotein berovin; PDBTitle: crystal structure of photoprotein berovin from beroe2 abyssicola Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.												.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure															.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	D	Q	Q	F	L	S	L	K	P	I	A	.	G	F	I	T	G	D	Q	A	R	N	F	F	F	Q	S	G	L	P	.	.	.	.	.	.	.	.	.	.	.	Q	P	V	L	A	Q	I	W	A	L	A	D	M	N	N	D	G
Query Conservation															.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	Y	K	R	F	D	T	F	D	L	D	S	D	G	K	X	E	X	D	E	V	L	Y	W	P	D	R	X	R	Q	L	V	N	A	T	D	E	Q	V	E	K	X	R	D	A	V	R	V	F	F	L	H	K	G	V	E	P	V	N
Template Known Secondary structure												T	T		S	S								T										S																					T	T		B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	D	Q	V	E	F	S	I	A	M	K	L	I	K	L	K	L	Q	G	Y	Q	L	P	S	T	L	P	P	V	M	K	Q	Q	P	V	A	I	S	S	A	P	A	F	G	I	G	G	I	A	S	M	P	P	L	T	A	V	A	P
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	L	R	E	D	W	V	E	A	N	R	V	F	A	E	A	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		B			G	G	G														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	M	G	S	I	P	V	V	G	M	S	P	P	L	V	S	S	V	P	P	A	A	V	P	P	L	A	N	G	A	P	P	V	I	Q	P	L	P	A	F	A	H	P	A	A	T	W	P	K	S	S	S	F	S	R	S	G	P	G
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	N	T	K	L	Q	K	A	Q	S	F	D	V	A	S	A	P	P	A	A	E	W	A	V	P	Q	S	S	R	L	K	Y	R	Q	L	F	N	S	H	D	K	T	M	S	G	H	L	T	G	P	Q	A	R	T	I	L	M	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	E	R	R	G	E	P	S	L	I	A	L	L	S	N	S	Y	Y	D	V	L	D	D	D	G	D	G	T	V	D	V	D	E	L	K	T	X	X	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T																		T	T		S	S	S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	L	P	Q	A	Q	L	A	S	I	W	N	L	S	D	I	D	Q	D	G	K	L	T	A	E	E	F	I	L	A	M	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	V	P	Q	E	A	A	Y	T	F	F	E	K	A	D	T	D	K	S	G	K	L	E	R	T	E	L	V	H	L	F	R
Template Known Secondary structure		T	T	S		T	T											T	T			S	S	B
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D