Job Description Q9Z0R4 Confidence 100.00% Date Tue Jul 30 13:06:10 BST 2013 Rank 14 Aligned Residues 336 % Identity 21% Template c1foeA_ PDB info PDB header:signaling protein, immune system/signali Chain: A: PDB Molecule:t-lymphoma invasion and metastasis inducing PDBTitle: crystal structure of rac1 in complex with the guanine2 nucleotide exchange region of tiam1 Resolution 2.80 Å Model Dimensions (Å) X:79.271 Y:80.561 Z:51.836

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		1227	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	T	E	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	D	K	L	R	K	V	I	C	E	L	L	E	T	E	R	T	Y	V	K	D	L	N	C	L	X	E	R	Y	L	K	P	L	Q	K	E	T	F	L	T	Q	D	E	L	D	V	L	F	G	N	L	T	E	X	V	E	F	Q	V
Template Known Secondary structure																															T						T	S	S	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		1037	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.
		1287	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.											.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	L	K	A	L	R	V	R	K	K	M	S	G	E	K	M	.	.	.	.	.	.	.	.	.	.	P	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	C	Q	L	N	G	A	A	L	I
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	L	K	T	L	E	D	G	V	R	L	V	P	D	L	E	K	L	E	K	V	D	Q	F	K	K	V	L	F	S	L	G	G	S	F	L	Y	Y	A	D	R	F	K	L	Y	S	A	F	C	A	S	H	T	K	V	P	K	V	L
Template Known Secondary structure												T	T	S	S		G	G	G			S	G	G	G	G															T	T	G	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.
		1337	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N	I	L	E	N	T	P	E	N	H	P	D	H
Query Conservation
Alig confidence					.																		.
Template Conservation					.																		.
Template Sequence		V	K	A	.	K	T	D	T	A	F	K	A	F	L	D	A	Q	N	P	R	Q	.	Q	H	S	S	T	L	E	S	Y	L	I	K	P	I	Q	R	V	L	K	Y	P	L	L	L	R	E	L	F	A	L	T	D	A	E	S	E	E	H
Template Known Secondary structure		T	T	T	.	T	T													T	T		.		G	G	G	S					T	T							T	T											T	S		T	T	S
Template Predicted Secondary structure					.																		.
Template SS confidence
		1157	.	.		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.		.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.
		1397	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K	F
Query Conservation
Alig confidence																																																				.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		Y	H	L	D	V	A	I	K	T	X	N	K	V	A	S	H	I	N	E	X	Q	K	I	H	E	E	F	G	A	V	F	D	Q	L	I	A	E	Q	T	G	E	K	K	E	V	A	D	L	S	X	.	.	.	.	.	.	G	D	L	L
Template Known Secondary structure																																					T	T		S	S		S		S	S					G	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		1215	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.							.	.	.	.
		1457	.	.	1460	.	.	.									.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.			.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																								.	.
Query SS confidence									.	.	.	.	.	.	.	.																								.	.
Query Sequence		L	H	S	G	K	L	Y	.	.	.	.	.	.	.	.	K	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	.	.	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y
Query Conservation									.	.	.	.	.	.	.	.																								.	.
Alig confidence									.	.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		L	H	T	S	V	I	W	L	N	P	P	A	S	L	G	K	W	K	K	E	P	E	L	A	A	F	V	F	K	T	A	V	V	L	V	Y	K	D	G	S	K	Q	K	K	K	L	V	G	S	H	R	L	S	I	Y	E	E	W	D	P
Template Known Secondary structure									S	S							T	T		S	S									T	T												S			S	S				T	T	T	T		S	S		S		S
Template Predicted Secondary structure
Template SS confidence
		1269	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.
		1507	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.										.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.
Query Sequence		K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	I	F	H	I	.	.	.	.	.	.	.	.	.	S	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q
Query Conservation																															.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	F	R	H	X	I	P	T	E	A	L	Q	V	R	A	L	P	S	A	D	A	E	A	N	A	V	C	E	I	V	H	V	K	S	E	S	E	G	R	P	E	R	V	F	H	L	C	C	S	S	P	E	S	R	K	D	F	L	K
Template Known Secondary structure										G	G	G									T	T	T	T	S											B	T	G	G	G	B										S	S
Template Predicted Secondary structure
Template SS confidence
		1329	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.
		1558	.	1560	.	.	.	.	.	.	.	.	.	1570
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	K	A	A	S	E	L	Y	I	E	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	H	S	I	L	R	D	K	H	R	R	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1389	1390	.	.	.	.	.	.	.	.	.	1400	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D