Emaill.a.kelley@imperial.ac.uk
DescriptionQ4QQM4
DateTue Jul 30 13:10:26 BST 2013
Unique Job ID24c8b9f7d2ca641e

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c3zf7S_



22.9 34 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
2c3qoqC_



20.2 54 PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
3c2hjnA_



17.1 13 PDB header:cell cycle
Chain: A: PDB Molecule:maintenance of ploidy protein mob1;
PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1
4d1ixrc1



17.0 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
5d1in4a1



15.4 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
6c3j39S_



15.2 26 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
7c2v6xB_



14.3 55 PDB header:protein transport
Chain: B: PDB Molecule:doa4-independent degradation protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4
8c3nr5A_



14.2 41 PDB header:transcription
Chain: A: PDB Molecule:repressor of rna polymerase iii transcription maf1 homolog;
PDBTitle: crystal structure of human maf1
9d1rk8b_



13.8 40 Fold:Mago nashi protein
Superfamily:Mago nashi protein
Family:Mago nashi protein
10c1t0fC_



13.7 24 PDB header:dna binding protein
Chain: C: PDB Molecule:transposon tn7 transposition protein tnsc;
PDBTitle: crystal structure of the tnsa/tnsc(504-555) complex
11d1mnta_



13.1 31 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
12c3pcqX_



12.7 15 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
13c1yewF_



12.6 15 PDB header:oxidoreductase, membrane protein
Chain: F: PDB Molecule:particulate methane monooxygenase, a subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
14c3di3A_



12.4 26 PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:interleukin-7;
PDBTitle: crystal structure of the complex of human interleukin-7 with2 glycosylated human interleukin-7 receptor alpha ectodomain
15c3j3bS_



12.4 29 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a;
PDBTitle: structure of the human 60s ribosomal proteins
16c1u9pA_



12.2 27 PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
17c3izcS_



12.1 26 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
18c3twfA_



11.7 60 PDB header:unknown function
Chain: A: PDB Molecule:alpha4f3a;
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3a
19c3twfB_



11.7 60 PDB header:unknown function
Chain: B: PDB Molecule:alpha4f3a;
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3a
20d1ixsb1



11.3 30 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
21c3chxF_



not modelled 10.8 15 PDB header:membrane protein
Chain: F: PDB Molecule:pmoa;
PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
22c3tweA_



not modelled 9.9 67 PDB header:unknown function
Chain: A: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
23c1ho7A_



not modelled 9.8 47 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel protein;
PDBTitle: nmr structure of the potassium channel fragment l45 in tfe
24c1ho2A_



not modelled 9.8 47 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel protein;
PDBTitle: nmr structure of the potassium channel fragment l45 in2 micelles
25c3tweB_



not modelled 9.6 67 PDB header:unknown function
Chain: B: PDB Molecule:alpha4h;
PDBTitle: crystal structure of the de novo designed peptide alpha4h
26d2gaxa1



not modelled 9.5 34 Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
27c3o27B_



not modelled 9.5 29 PDB header:dna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
28c4a19X_



not modelled 9.3 13 PDB header:ribosome
Chain: X: PDB Molecule:rpl18a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
29c3jtgA_



not modelled 9.1 33 PDB header:transcription
Chain: A: PDB Molecule:ets-related transcription factor elf-3;
PDBTitle: crystal structure of mouse elf3 c-terminal dna-binding domain in2 complex with type ii tgf-beta receptor promoter dna
30d2j0sc1



not modelled 8.9 45 Fold:Mago nashi protein
Superfamily:Mago nashi protein
Family:Mago nashi protein
31c4fe1X_



not modelled 8.8 15 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
32c1jb0X_



not modelled 8.8 15 PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
33d1jb0x_



not modelled 8.8 15 Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
34c2bbdA_



not modelled 8.8 40 PDB header:viral protein
Chain: A: PDB Molecule:coat protein;
PDBTitle: crystal structure of the stiv mcp
35c1kyqC_



not modelled 8.7 31 PDB header:oxidoreductase, lyase
Chain: C: PDB Molecule:siroheme biosynthesis protein met8;
PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis.
36c3zpyB_



not modelled 8.5 24 PDB header:lyase
Chain: B: PDB Molecule:alginate lyase, family pl7;
PDBTitle: crystal structure of the marine pl7 alginate lyase alya12 from zobellia galactanivorans
37c4gd3B_



not modelled 8.4 12 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
38c4gd3A_



not modelled 8.4 12 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
39c3izci_



not modelled 8.4 38 PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
40c2islB_



not modelled 8.1 29 PDB header:flavoprotein
Chain: B: PDB Molecule:blub;
PDBTitle: blub bound to reduced flavin (fmnh2) and molecular oxygen.2 (clear crystal form)
41c3iz5i_



not modelled 8.0 38 PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
42c1nybA_



not modelled 7.9 36 PDB header:transcription/rna
Chain: A: PDB Molecule:probable regulatory protein n;
PDBTitle: solution structure of the bacteriophage phi21 n peptide-boxb2 rna complex
43c3lw6A_



not modelled 7.8 63 PDB header:transferase
Chain: A: PDB Molecule:beta-4-galactosyltransferase 7;
PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7
44d1b9ha_



not modelled 7.4 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
45d1oe4a_



not modelled 6.8 26 Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
46d1kqfc_



not modelled 6.8 18 Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Formate dehydrogenase N, cytochrome (gamma) subunit
47d2frea1



not modelled 6.8 25 Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
48d1jvra_



not modelled 6.8 23 Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:HTLV-II matrix protein
49c3a0hJ_



not modelled 6.7 21 PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
50d2axtj1



not modelled 6.7 21 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
51c3j3bg_



not modelled 6.6 25 PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
52d2iu5a2



not modelled 6.5 25 Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
53d3cx5d2



not modelled 6.4 50 Fold:Single transmembrane helix
Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
54d1ppjd2



not modelled 6.2 63 Fold:Single transmembrane helix
Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
55c2zkrq_



not modelled 6.1 20 PDB header:ribosomal protein/rna
Chain: Q: PDB Molecule:rna expansion segment es31 part ii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
56c3ge5A_



not modelled 6.1 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h:fmn oxidoreductase;
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (pg0310)2 from porphyromonas gingivalis w83 at 1.70 a resolution
57c1ckkB_



not modelled 6.1 25 PDB header:calmodulin-peptide complex
Chain: B: PDB Molecule:protein (rat ca2+/calmodulin dependent protein
PDBTitle: calmodulin/rat ca2+/calmodulin dependent protein kinase2 fragment
58d1pv0a_



not modelled 6.0 27 Fold:Long alpha-hairpin
Superfamily:Sporulation inhibitor Sda
Family:Sporulation inhibitor Sda
59d2e74f1



not modelled 5.9 46 Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
60c3u5eS_



not modelled 5.9 37 PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l20-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
61c3j21d_



not modelled 5.9 36 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l4p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
62c3bemA_



not modelled 5.9 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative nad(p)h nitroreductase ydfn;
PDBTitle: crystal structure of putative nitroreductase ydfn (2632848) from2 bacillus subtilis at 1.65 a resolution
63c1q2iA_



not modelled 5.8 40 PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
64c3ho5B_



not modelled 5.8 69 PDB header:signaling protein
Chain: B: PDB Molecule:hedgehog-interacting protein;
PDBTitle: crystal structure of hedgehog-interacting protein (hhip) and sonic2 hedgehog (shh) complex
65d1dp7p_



not modelled 5.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:P4 origin-binding domain-like
66d1ef5a_



not modelled 5.6 40 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
67d1k8ib2



not modelled 5.6 32 Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
68c2ebyA_



not modelled 5.6 12 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
69c4a19L_



not modelled 5.2 44 PDB header:ribosome
Chain: L: PDB Molecule:rpl34;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
70c2kpmA_



not modelled 5.2 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of uncharacterized protein from gene2 locus ne0665 of nitrosomonas europaea. northeast structural3 genomics target ner103a
71c3j39g_



not modelled 5.1 58 PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
72d2jxta1



not modelled 5.1 21 Fold:RplX-like
Superfamily:RplX-like
Family:RplX-like
73c2zuuA_



not modelled 5.1 38 PDB header:transferase
Chain: A: PDB Molecule:lacto-n-biose phosphorylase;
PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac
74c3mtvA_



not modelled 5.1 22 PDB header:hydrolase
Chain: A: PDB Molecule:papain-like cysteine protease;
PDBTitle: the crystal structure of the prrsv nonstructural protein nsp1
75c1ujwB_



not modelled 5.1 44 PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:colicin e3;
PDBTitle: structure of the complex between btub and colicin e3 receptor binding2 domain