Job Description O54836 Confidence 98.72% Date Wed Jul 10 14:35:54 BST 2013 Rank 19 Aligned Residues 97 % Identity 14% Template c4f6nA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:transcriptional regulator kaiso; PDBTitle: crystal structure of kaiso zinc finger dna binding protein in complex2 with methylated cpg site dna Resolution 2.80 Å Model Dimensions (Å) X:54.017 Y:40.210 Z:36.539

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	L	C	K	P	L	F	C	K	L	C	N	V	T	L	N	S	A	Q	Q	A	Q	A	H	Y	Q	G	K	N	H	G	K	K	L	R	N	Y	Y	A	A	N	S	C	P	P	P	A	R	V	S	S	V	V	A	E	P	V	A
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	D	G	R	V	Y	Y	I	C	I	V	C	K	R	S	Y	V	C	L	T	S	L	R	R	H	F	N	I	H	S	W	E	K	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	C
Template Known Secondary structure				T	T							T	T	T					S																S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.																							.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	L	V	P	V	P	P	Q	V	G	S	C	K	P	G	G	R	V	I	L	A	T	E	N	D	Y	C	K	L	C	D	A	S	F	S	S	P	A	V	A	Q	A	H	Y	Q	G	K	N	H	A	K	R	L	R	L	A	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	C	E	K	V	F	P	L	A	E	Y	R	T	K	H	E	I	H	H	T	G	E	R	R	Y	Q	C	L	A	C	G	K	S	F	I	N	Y	Q	F	M	S	S	H	I	K	S	V	H	S	Q	D	P	S	G	D	S	K	L
Template Known Secondary structure		S	S	S	S				S	S													T							T	T	T					S	S																S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D