Job Description O54836 Confidence 46.15% Date Wed Jul 10 14:35:54 BST 2013 Rank 227 Aligned Residues 106 % Identity 6% Template c3hcsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: crystal structure of the n-terminal domain of traf6 Resolution 2.20 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	Y	C	K	L	C	D	A	S	F	S	S	P	A	V	A	Q	A	H	Y	Q	G	K	N	H	A	K	R	L	R	L	A	E	A	Q	S	H	S	F	S	D	S	A	E	A	G	Q	R	R	T	R	K	E	G	S	E	F	K	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	K	C	P	V	D	N	E	I	L	L	E	N	Q	L	F	P	D	N	F	A	K	R	E	I	L	S	L	M	V	K	C	P	N	E	G	C	L	H	K	M	E	L	R	H	L	E	D	H	Q	A	H	C	E	F	A	L	M	D
Template Known Secondary structure			S	B		T	T	T			B			G	G	G													T	S						S	T	T							G	G	G						T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	R	R	N	M	N	P	V	Q	S	N	S	G	P	Y	F	N	A	R	S	R	Q	R	I	P	R	D	L	A	M	C	V	T	P	S	G	Q	F	Y	C	S	M	C	N	V	G	A	G	E	E	V	E	F	R	Q	H	L	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		C	P	Q	C	Q	R	P	F	Q	K	F	H	I	N	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	K	D	C	P	R	R	Q	V	S	C	D	N	C	A	A	S	M	A	.	F	E	D	K	E	I	H	D	Q
Template Known Secondary structure			T	T	T						G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.				T		T	T						T	T	T						.	G	G	G						T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.															.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.
		267
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		207

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D