Job Description O54836 Confidence 28.38% Date Wed Jul 10 14:35:54 BST 2013 Rank 239 Aligned Residues 50 % Identity 18% Template c2iykB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1 Resolution 2.95 Å

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		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.							.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		V	T	P	S	G	Q	F	Y	C	S	M	C	N	V	G	A	.	.	.	.	.	.	G	E	E	V	E	F	R	Q	H	L	E	S	K	Q	H	K	.	.	.	.	.	.	.	S	K	V	S	E	Q	R	Y	R	S	E	M	E	N	L
Query Conservation																		.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	P	A	C	V	V	Y	C	N	T	S	K	K	W	F	C	N	G	R	G	N	T	S	G	S	H	I	V	N	H	L	V	R	A	K	C	K	E	V	T	L	H	K	D	G	P	L	G	E	T	V	L	E	C	Y	N	C	G	C
Template Known Secondary structure				T	T	T					T	T	T	T					S			T	T	S	S	S										T	T								T	T	S	T	T		S		B				T	T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		287	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	V
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		79	80	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D