Job Description O54836 Confidence 98.80% Date Wed Jul 10 14:35:54 BST 2013 Rank 17 Aligned Residues 85 % Identity 21% Template c1x6hA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional repressor ctcf; PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human transcriptional repressor ctcf Resolution UNK Model Dimensions (Å) X:50.753 Y:40.323 Z:36.264

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	C	K	P	G	G	R	V	I	L	A	T	E	N	D	Y	C	K	L	C	D	A	S	F	S	S	P	A	V	A	Q	A	H	Y	Q	G	K	N	H	A	K	R	L	R	L	A	E	A	Q	S	H	S	F	S	D	S	A	E	A
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	S	G	S	S	G	R	T	H	T	G	E	K	P	Y	A	C	S	H	C	D	K	T	F	R	Q	K	Q	L	L	D	M	H	F	K	R	Y	H	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T			S	T	T										S	S	S	S				S	S											T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	R	R	T	R	K	E	G	S	E	F	K	M	V	A	T	R	R	N	M	N	P	V	Q	S	N	S	G	P	Y	F	N	A	R	S	R	Q	R	I	P	R	D	L	A	M	C	V	T	P	S	G	Q	F	Y	C	S	M	C	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	V	P	A	A	F	V	C	S	K	C	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																	42	.	.	.	.	.	.	.	50	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	G	E	E	V	E	F	R	Q	H	L	E	S	K	Q	H	K	S	K	V	S	E	Q	R	Y	R	S	E	M	E	N	L	G	Y
Query Conservation
Alig confidence															.	.						.	.	.
Template Conservation															.	.						.	.	.
Template Sequence		K	T	F	T	R	R	N	T	M	A	R	H	A	.	.	D	N	C	A	G	.	.	.	P	D	G	V	E	G	E	N	S	G	P	S	S
Template Known Secondary structure					S										.	.						.	.	.			S
Template Predicted Secondary structure															.	.						.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D