Job Description O54836 Confidence 98.28% Date Wed Jul 10 14:35:54 BST 2013 Rank 41 Aligned Residues 100 % Identity 6% Template c1ubdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:protein (yy1 zinc finger domain); PDBTitle: co-crystal structure of human yy1 zinc finger domain bound2 to the adeno-associated virus p5 initiator element Resolution 2.50 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.
Query Sequence		C	K	L	C	N	V	T	L	N	S	A	Q	Q	A	Q	A	H	Y	Q	G	K	N	H	G	K	K	L	.	.	.	.	.	.	.	.	.	R	N	Y	Y	A	A	N	S	C	P	P	P	A	R	V	S	S	V	V	A	E	P	V	A
Query Conservation																													.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	G	C	T	K	M	F	R	D	N	S	A	M	R	K	H	L	H	T	H	G	P	R	V	H	V	C	A	E	C	G	K	A	F	V	E	S	S	K	L	K	R	H	Q	L	V	H	T	G	E	K	P	F	Q	C	T	F	E	G
Template Known Secondary structure		S	T	T						S	S									G	G	G	S							T	T	T					S	S								G	G	G	T	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	L	V	P	V	P	P	Q	V	G	S	C	K	P	G	G	R	V	I	L	A	T	E	N	D	Y	C	K	L	C	D	A	S	F	S	S	P	A	V	A	Q	A	H	Y	Q	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	K	R	F	S	L	D	F	N	L	R	T	H	V	R	I	H	T	G	D	R	P	Y	V	C	P	F	D	G	C	N	K	K	F	A	Q	S	T	N	L	K	S	H	I	L	T	H	A
Template Known Secondary structure							S																						S	T	T						S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D