Job Description O54836 Confidence 99.07% Date Wed Jul 10 14:35:54 BST 2013 Rank 5 Aligned Residues 108 % Identity 12% Template c1tf6D_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:protein (transcription factor iiia); PDBTitle: co-crystal structure of xenopus tfiiia zinc finger domain2 bound to the 5s ribosomal rna gene internal control region Resolution 3.10 Å Model Dimensions (Å) X:63.410 Y:104.833 Z:32.372

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		64	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	L	C	K	P	L	F	C	K	L	.	.	C	N	V	T	L	N	S	A	Q	Q	A	Q	A	H	Y	Q	G	K	N	H	G	K	K	L	R	N	Y	Y	A	A	N	S	C	P	P	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	V	Y	K	R	Y	I	C	S	F	A	D	C	G	A	A	Y	N	K	N	W	K	L	Q	A	H	L	C	K	H	T	G	E	K	P	F	P	C	K	E	E	G	C	E	K	G	F	T	S	L	H	H	L	T	R	H	S	L	T
Template Known Secondary structure				S	S	S			B		S	S	T	T	T			B		S	S													T			S	S			S	S	T	T						S	S	T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	G	E	K	N	F	T	C	D	S	D	G	C	D	L	R	F	T	T	K	A	N	M	K	K	H	F	N	R	F	H	N	I	K	I	C	V	Y	V	C	H	F	E	N	C	G	K	A	F	K	K	H	N	Q	L	K	V	H	Q
Template Known Secondary structure		T	T	T								S	S	S						S											T	T	S	S	T	T	T			B			T	T	S	S	S				B	S	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	V	S	S	V	V	A	E	P	V	A	T	P	L	V	P	V	P	P	Q	V	G	S	C	K	P	G	G	R	V	I	L	A	T	E	N	D	Y	C	K	L	C	D	A	S	F	S	S	P	A	V	A	Q	A	H	Y	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	S	H	T	Q	Q	L	P	Y	E	C	P	H	E	G	C	D	K	R	F	S	L	P	S	R	L	K	R	H	E	K	V	H	A	G	Y	P	C	K	K	D	D	S	C	S	F	V	G	K	T	W	T	L	Y	L	K	H	V	A	E
Template Known Secondary structure			T	T	S	S	S		S	S	B			S	S	S				B		S	S									T	S	S		S					S	T	T	T						S										T	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		187	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D