Job Description Q9CX99 Confidence 72.19% Date Tue Jul 30 12:56:35 BST 2013 Rank 312 Aligned Residues 141 % Identity 20% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	K	P	H	P	W	Y	S	G	R	I	S	R	Q	L	A	E	E	T	L	M	K	R	N	H	L	G	A	F	L	I	R	E	S	E	S	S	P	G	E	F	S	V	S	V	N	Y	G	D	Q	V	Q	H	F	K	V	L	R	E
Query Conservation
Alig confidence											.																.	.									.
Template Conservation											.																.	.									.
Template Sequence		R	F	Y	K	H	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	S	T	.	.	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E
Template Known Secondary structure		G	G	G	G	S	T	T			.														S	S	.	.									.	S	S	T	T										T	T
Template Predicted Secondary structure											.																.	.									.
Template SS confidence
		788	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.			.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.
Query Sequence		A	S	G	K	Y	F	L	W	E	E	K	F	N	S	L	N	E	L	V	D	F	Y	R	T	T	T	I	A	K	R	R	Q	I	.	.	.	.	.	.	.	.	F	L	C	D	E	Q	P	L	I	K	P	S	R	A	C	F	A	Q	A
Query Conservation																																			.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y
Template Known Secondary structure			S	S					T	T				S	S								T														S	T	T	B		S		T	T	T	S						T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		844	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.
		166	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		Q	F	D	F	S	A	Q	D	P	S	Q	.	.	L	S	L	R	R	G	D	I	V	E	V	V	E	R	E	D	P	H	W	W	R	G
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	L	T	Y	N
Template Known Secondary structure							S	S	S	T	T								S	S	S									S	S	S				T
Template Predicted Secondary structure
Template SS confidence
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D