Phyre 2 alignment of Q5SQX6 with c2jrzA_

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Job Description | Q5SQX6
Confidence | 6.07% | Date | Wed Jul 10 14:11:20 BST 2013
Rank | 88 | Aligned Residues | 62
% Identity | 16% | Template | c2jrzA_
PDB info | PDB header:oxidoreductase | Chain: A: PDB Molecule:histone demethylase jarid1c; | PDBTitle: solution structure of the bright/arid domain from the human2 jarid1c protein.
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 603 | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | L | L | N | I | S | E | A | L | Q | Q | C | C | D | L | S | Q | L | W | F | R | E | F | F | L | E | L | T | M | G | R | R | I | Q | F | P | I | E | M | S | M | P | W | I | L | T | D | H | I | L | E | T | K | E | P | S | M | M | E | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | .
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | .
Template Sequence |  | D | L | Y | S | L | S | K | I | V | V | E | E | G | G | Y | E | A | I | C | K | D | R | R | W | A | R | V | A | . | . | Q | R | L | N | Y | P | P | G | K | N | I | G | S | L | L | R | S | H | Y | E | R | I | . | . | . | . | . | . | . | .
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  | . | . |  |  | T | T |  |  | T | T |  | T |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | . | .
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | .
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . |  |  | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |  |  |  |  |  |  |  |
|  | 663 | . | . | . | . | . | . | 670 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | L | Y | P | L | D | L | Y | N | D | S | A | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | . | V | Y | P | Y | E | M | Y | Q | S | G | A | N
Template Known Secondary structure |  | . | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  | 91 | . | . | . | . | . | . | . | . | 100 | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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