Phyre 2 alignment of Q5SQX6 with c3thzA_

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Job Description | Q5SQX6
Confidence | 6.76% | Date | Wed Jul 10 14:11:20 BST 2013
Rank | 70 | Aligned Residues | 40
% Identity | 25% | Template | c3thzA_
PDB info | PDB header:dna binding protein/dna | Chain: A: PDB Molecule:dna mismatch repair protein msh2; | PDBTitle: human mutsbeta complexed with an idl of 6 bases (loop6) and adp
Resolution | 4.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 1088 | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | L | S | M | F | E | V | I | L | T | R | I | R | S | Y | L | Q | . | . | . | . | . | . | . | . | . | . | D | P | I | W | R | G | P | P | P | T | N | G | V | M | H | V | D | E | C | V | E | F | H | R | L | W | S | A | M | Q | F | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | V | S | T | F | M | A | E | M | L | E | T | A | S | I | L | R | S | A | T | K | D | S | L | I | I | I | D | E | L | G | R | G | T | S | T | Y | . | . | . | . | . | . | . | . | . | D | G | F | G | L | A | W | A | I | S | E | Y | I
Template Known Secondary structure |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | T | T |  |  |  |  |  |  | S |  |  |  | S | S |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 721 | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | 760 | . | . | . | . | . | . | . | . | . | 770

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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