Phyre 2 alignment of Q5SQX6 with c1iyjB_

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Job Description | Q5SQX6
Confidence | 6.19% | Date | Wed Jul 10 14:11:20 BST 2013
Rank | 84 | Aligned Residues | 40
% Identity | 23% | Template | c1iyjB_
PDB info | PDB header:gene regulation/antitumor protein | Chain: B: PDB Molecule:breast cancer susceptibility; | PDBTitle: structure of a brca2-dss1 complex
Resolution | 3.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 377 | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . |  |  | . | . | . |  |  | . | . | 400 | . | . |  | . | . | . | . | . | . | . | 410 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | D | S | Q | K | S | D | E | E | Y | R | E | L | F | D | L | A | L | . | . | R | G | L | . | . | Q | L | L | S | K | . | W | S | A | H | V | M | E | V | Y | S | W | K | L | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | P | S | D | D | G | K | A | G | K | E | E | F | Y | R | A | L | C | D | T | P | G | V | D | P | K | L | I | S | S | V | W | V | S | N | H | Y | R | W | I | V | W | K | L | A
Template Known Secondary structure |  |  |  |  | T | T | S |  | B |  |  |  |  |  |  |  |  |  |  | T | S | T | T |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2518 | . | 2520 | . | . | . | . | . | . | . | . | . | 2530 | . | . | . | . | . | . | . | . | . | 2540 | . | . | . | . | . | . | . | . | . | 2550 | . | . | . | . | . | . | . | . | . | 2560 | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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