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Job DescriptionQ03526
Confidence100.00%DateWed Jul 10 14:09:50 BST 2013
Rank28Aligned Residues251
% Identity20%Templatec3c4wB_
PDB info PDB header:transferaseChain: B: PDB Molecule:rhodopsin kinase; PDBTitle: crystal structure of g protein coupled receptor kinase 1 bound to atp2 and magnesium chloride at 2.7a
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   362.......370.........380........ .390.........400.. .......410......
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Query Sequence  VIQPSELTFVQEIGSGQFGLVHLGYWL. NKDKVAIKTIQEGA. . . . MSEEDFIEEAEVMM
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Template Sequence  PMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILA
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   181........190.........200.........210.........220.........230.........240
 
   417..420.........430.........440.........450.... .....460.........470...
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Query Sequence  KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRS. . . QRGLFAAETLLGMCLDVCE
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Template Sequence  KVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVS
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   241........250.........260.........270.........280.........290.........300
 
   474.....480.........490.........500.........510.........520.........530...
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Query Sequence  GMAYLEKACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPE
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Template Sequence  GLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAV. ELKAGQTKTKGYAGTPGFMAPE
Template Known Secondary structure  TT




GGG
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   301........310.........320.........330....... ..340.........350.........
 
   534.....540.........550.........560....... ..570.........580.........
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Query Sequence  VFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR. . . . SNSEVVEDISTGFRLYKPRLAS
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Template Sequence  LLLGEEYDFSVDYFALGVTLYEMIA. ARGPFRARGEKVENKELKQRVLE. QAVTYPDKFS
Template Known Secondary structure  TT

B
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   360.........370.........380.... .....390.........400....... ..410.......
 
   590.........600....... ..610.....
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Query Sequence  CHVYQIMNHCWKEKPEDR. . . . . PPFSQLLS
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Template Sequence  PASKDFCEALLQKDPEKRLGFRDGSCDGLRT
Template Known Secondary structure  S
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BTTBSTTGGG
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   418.420.........430.........440........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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