Job Description Q64143 Confidence 24.00% Date Wed Jul 10 14:20:57 BST 2013 Rank 268 Aligned Residues 160 % Identity 11% Template c3r2pA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: 2.2 angstrom crystal structure of c terminal truncated human2 apolipoprotein a-i reveals the assembly of hdl by dimerization. Resolution 2.20 Å

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		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190											.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	V	S	R	F	Q	Q	D	Q	L	V	K	E	D	N	I	D	A	V	G	K	N	L	Q	E	F	H	S	Q	Y	Q	E	.	.	.	.	.	.	.	.	.	.	K	S	K	E	Y	D	R	L	Y	E	E	Y	T	R	T	S	Q
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	Q	S	P	W	D	R	V	K	D	L	A	T	V	Y	V	D	V	L	K	D	S	G	R	D	Y	V	S	Q	F	E	G	S	A	L	G	K	Q	L	N	L	K	L	L	D	N	W	D	S	V	T	S	T	F	S	K	L	R	E
Template Known Secondary structure						T	T											T																	S						T	T					T	T		S		S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		208	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		E	I	Q	M	K	R	T	A	I	E	A	.	F	N	E	T	I	K	I	F	E	E	Q	C	H	T	Q	E	Q	H	S	K	D	Y	I	E	R	F	R	R	E	G	N	E	K	E	I	E	R	I	M	M	N	Y	D	K	L	K	S	R
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		Q	L	G	P	V	T	Q	E	F	W	D	N	L	E	K	E	T	E	G	L	R	Q	E	M	S	K	D	L	E	E	V	K	A	K	V	Q	P	Y	L	D	D	F	Q	K	K	W	Q	E	E	M	E	L	Y	R	Q	K	V	E	P	L
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		267	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																				.
Query SS confidence												.	.	.	.	.	.	.	.																				.
Query Sequence		L	G	E	I	H	D	S	K	L	R	.	.	.	.	.	.	.	.	L	E	Q	D	L	K	K	Q	A	L	D	N	R	E	I	D	K	K	M	.	N	S	I	K	P	D	L	I	Q	L	R	K	I	R	D	Q	H	L	V	W	L	N
Query Conservation												.	.	.	.	.	.	.	.																				.
Alig confidence												.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		R	A	E	L	Q	E	G	A	R	Q	K	L	H	E	L	Q	E	K	L	S	P	L	G	E	E	M	R	D	R	A	R	A	H	V	D	A	L	R	T	H	L	A	P	Y	S	D	E	L	R	Q	R	L	A	A	R	L	E	A	L	K
Template Known Secondary structure														T	T	T	T	T	T	S																																							T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D