Job Description P47941 Confidence 99.75% Date Wed Jul 10 14:10:41 BST 2013 Rank 112 Aligned Residues 140 % Identity 14% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	A	W	Y	M	G	P	V	T	R	Q	E	A	Q	T	R	L	Q	G	Q	R	H	G	M	F	L	V	R	D	S	S	T	C	P	G	D	Y	V	L	S	V	S	E	N	S	R	V	S	H	Y	I	I	N	S	L	P	N	R	R
Query Conservation
Alig confidence								.														.											.
Template Conservation								.														.											.
Template Sequence		K	H	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H
Template Known Secondary structure		G	S	T	T			.														.	S	S									.	S	S	T	T										T	T											S	S
Template Predicted Secondary structure								.														.											.
Template SS confidence
		791	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.		810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.
Predicted Secondary structure																																																								.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.
Query Sequence		F	K	I	G	D	Q	E	F	D	H	L	P	A	L	L	E	F	Y	K	I	H	Y	L	D	T	T	T	L	I	E	P	A	P	R	Y	P	S	P	P	V	G	S	V	S	A	P	N	L	P	T	A	E	E	N	.	.	.	.	.	L
Query Conservation																																																								.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	.	.	.	.	.	.	.	.	.	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	D	A	E	K	L	L	S	S	F	D	G
Template Known Secondary structure					T	T				S	S								T							.	.	.	.	.	.	.	.	.								S	T	T	B		S		T	T	T	S						T			S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.										.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		E	Y	V	R	T	L	Y	D	F	P	G	N	D	A	E	D	.	.	L	P	F	K	K	G	E	L	L	V	I	I	E	K	P	E	E	Q	W	W	S
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	L	T	Y
Template Known Secondary structure		S	S									S	S	S	T	T								S	S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		899	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D