Job Description P24604 Confidence 100.00% Date Tue Jul 30 13:00:36 BST 2013 Rank 42 Aligned Residues 289 % Identity 21% Template c4dn5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik) Resolution 2.50 Å

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		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	P	E	I	I	E	Y	H	K	H	N	A	A	G	L	V	T	R	L	R	Y	P	V	S	T	K	G	K	N	A	P	T	T	A	G	F	S	Y	D	K	W	E	I	N	P	S	E	L	T	F	M	R	E	L	G	S	G	L	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	S	L	A	K	T	W	A	A	R	G	S	R	S	R	E	P	S	P	K	T	E	D	N	E	G	V	L	L	T	E	K	L	K	P	V	D	Y	E	Y	R	E	E	V	H	W	A	T	H	Q	L	R	L	G	R	G	S	F
Template Known Secondary structure														T	T	S							S										S	T	T	S			B	T	T	B			B	T	T	T					S	S		S				S	S
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		381	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	V	V	R	L	G	K	W	R	.	A	Q	Y	K	V	A	I	K	A	I	R	E	G	A	M	C	E	E	D	F	I	E	E	A	K	V	M	M	K	L	T	H	P	K	L	V	Q	L	Y	G	V	C	T	Q	Q	K	P	I	Y	I
Query Conservation											.
Alig confidence											.																		.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		G	E	V	H	R	M	E	D	K	Q	T	G	F	Q	C	A	V	K	K	V	R	L	E	V	F	R	A	.	.	.	.	E	E	L	M	A	C	A	G	L	T	S	P	R	I	V	P	L	Y	G	A	V	R	E	G	P	W	V	N	I
Template Known Secondary structure										T	T	T											T	T	T			T	.	.	.	.					T	T	S	S				T	T	B										T	T
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	E	F	M	E	R	G	C	L	L	N	F	L	R	Q	R	Q	G	H	F	S	R	D	M	L	L	S	M	C	Q	D	V	C	E	G	M	E	Y	L	E	R	N	S	F	I	H	R	D	L	A	A	R	N	C	L	V	N	E	A
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		F	M	E	L	L	E	G	G	S	L	G	Q	L	V	K	E	Q	G	.	C	L	P	E	D	R	A	L	Y	Y	L	G	Q	A	L	E	G	L	E	Y	L	H	S	R	R	I	L	H	G	D	V	K	A	D	N	V	L	L	S	S	D
Template Known Secondary structure							T	T		B									S	.	S																							T	T				S			S	G	G	G					T	T
Template Predicted Secondary structure																				.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		500	.		.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		G	V	.	V	K	V	S	D	F	G	M	A	R	Y	V	L	D	D	Q	Y	T	S	S	S	G	A	K	F	P	V	K	W	C	P	P	E	V	F	N	Y	S	R	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	I	F
Query Conservation				.
Alig confidence				.											.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		G	S	H	A	A	L	C	D	F	G	H	A	V	.	.	.	.	.	.	.	.	.	C	L	Q	I	P	G	T	E	T	H	M	A	P	E	V	V	L	G	R	S	C	D	A	K	V	D	V	W	S	S	C	C	M	M	L	H	M	L
Template Known Secondary structure		S									T	T			.	.	.	.	.	.	.	.	.						S		G	G	G							T	T					T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.										540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		T	E	G	R	M	P	F	E	K	N	T	N	Y	E	V	V	T	M	V	T	R	G	H	.	.	R	L	H	R	P	K	L	A	T	K	Y	L	Y	E	V	M	L	R	C	W	Q	E	R	P	E	G	R	P	S	L	E	D	L	L	R
Query Conservation																									.	.
Alig confidence			.																						.	.
Template Conservation			.
Template Sequence		N	.	G	C	H	P	W	T	Q	F	F	R	G	P	L	C	L	K	I	A	S	E	P	P	P	V	R	E	I	P	P	S	C	A	P	L	T	A	Q	A	I	Q	E	G	L	R	K	E	P	I	H	R	V	S	A	A	E	L	G	G
Template Known Secondary structure			.	S	S		T	T	T	T	T			S									S			G	G	G	G	S		T	T	S												S		S	S	T	T	S	S
Template Predicted Secondary structure			.
Template SS confidence
		591		.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
		617	.	.	620	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	D	E	L	V	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	N	R	A	L	Q	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		650	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D