Job Description Q62270 Confidence 100.00% Date Tue Jul 30 13:00:53 BST 2013 Rank 281 Aligned Residues 246 % Identity 26% Template c4aaaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cyclin-dependent kinase-like 2; PDBTitle: crystal structure of the human cdkl2 kinase domain Resolution 1.53 Å

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		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																										.																.	.	.
Query SS confidence																										.																.	.	.
Query Sequence		S	E	F	V	L	R	R	K	L	G	E	G	F	F	G	E	V	W	E	G	L	W	L	G	.	S	I	P	V	A	V	K	V	I	K	S	A	D	M	K	.	.	.	L	A	D	L	T	K	E	I	E	A	L	K	S	L	R	H	E
Query Conservation																										.																.	.	.
Alig confidence																										.																.	.	.
Template Conservation
Template Sequence		E	K	Y	E	N	L	G	L	V	G	E	G	S	Y	G	M	V	M	K	C	R	N	K	D	T	G	R	I	V	A	I	K	K	F	L	E	S	D	D	D	K	M	V	K	K	I	A	M	R	E	I	K	L	L	K	Q	L	R	H	E
Template Known Secondary structure		G	G							G	G	G	G	T	T	S	S							T	T	T											S		S	S																					T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	I	R	L	H	A	I	C	S	L	G	E	P	V	Y	I	V	T	E	L	M	G	K	G	N	L	Q	V	Y	L	G	S	S	E	G	K	A	L	S	L	P	H	L	L	G	F	A	C	Q	V	A	E	G	M	S	Y	L	E	E
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		N	L	V	N	L	L	E	V	C	K	K	K	K	R	W	Y	L	V	F	E	F	V	D	H	T	I	L	D	D	L	E	L	F	P	N	.	.	G	L	D	Y	Q	V	V	Q	K	Y	L	F	Q	I	I	N	G	I	G	F	C	H	S
Template Known Secondary structure		T	B										T	T										S										S	T	T	.	.
Template Predicted Secondary structure																																					.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		R	R	V	V	H	R	D	L	A	A	R	N	V	L	V	G	D	D	L	T	C	K	V	A	D	F	G	L	A	R	L	L	K	D	D	V	Y	S	P	S	S	G	S	K	I	P	V	K	W	T	A	P	E	A	A	N	Y	.	R	V
Query Conservation																																																											.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	N	I	I	H	R	D	I	K	P	E	N	I	L	V	S	Q	S	G	V	V	K	L	C	D	F	G	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	T	R	W	Y	R	A	P	E	L	L	V	G	D	V	K
Template Known Secondary structure		T	T								G	G	G					T	T	S								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.						T	T							T	T		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.														.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	Q	K	S	D	V	W	S	F	G	I	L	L	Y	E	V	F	T	Y	G	Q	C	P	Y	E	G	M	T	N	H	E	T	L	Q	Q	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		Y	G	K	A	V	D	V	W	A	I	G	C	L	V	T	E	M	F	M	.	G	E	P	L	F	P	G	D	S	D	I	D	Q	L	Y	H	I	M	M	C	L	G	N	L	I	P	R	H	Q	E	L	F	N	K	N	P	V	F	A	G
Template Known Secondary structure				T																	.	S	S		S				S	S														S													G	G	G	T	T
Template Predicted Secondary structure																					.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
										445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.			.	.	.							.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																							.	.				.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																							.	.				.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	R	G	Y	R	L	P	R	P	A	V	C	P	A	E	V	Y	V	L	M	V	E	C	W	K	G	S	P	E	E	R	P	T	F	A	I	L	R	E	.	.	K	L	N	.	.	.	.	.	.	A	I	N
Query Conservation		.	.	.	.	.	.	.	.																																							.	.				.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																							.	.				.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	L	P	E	I	K	E	R	E	P	L	E	R	R	Y	P	K	L	S	E	V	V	I	D	L	A	K	K	C	L	H	I	D	P	D	K	R	P	F	C	A	E	L	L	H	H	D	F	F	Q	M	D	G	F	A	E	R	F	S
Template Known Secondary structure								S	S								S	T	T	S												T		S	S	G	G	G	S			G	G	G	G	G	G	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		489	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	L	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D