Job Description Q62270 Confidence 100.00% Date Tue Jul 30 13:00:53 BST 2013 Rank 273 Aligned Residues 236 % Identity 19% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		R	S	E	F	V	L	R	R	K	L	G	E	G	F	F	G	E	V	W	E	G	L	W	L	.	.	.	G	S	I	P	V	A	V	K	V	I	K	S	A	D	M	K	L	A	D	L	T	K	E	I	E	A	L	K	S	L	R	H	E
Query Conservation																										.	.	.
Alig confidence																										.	.	.																		.
Template Conservation																																														.
Template Sequence		R	E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	.	S	A	C	R	E	I	A	L	L	R	E	L	K	H	P
Template Known Secondary structure												S	S												S	S	S	S											S	S	S	S				.															T
Template Predicted Secondary structure																																														.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		288	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		R	L	I	R	L	H	A	I	.	.	C	S	L	G	E	P	V	Y	I	V	T	E	L	M	G	K	G	N	L	Q	V	Y	L	G	S	S	E	G	K	A	L	S	L	P	H	L	L	G	F	A	C	Q	V	A	E	G	M	S	Y	L
Query Conservation										.	.
Alig confidence										.	.																											.
Template Conservation																																						.
Template Sequence		N	V	I	S	L	Q	K	V	F	L	S	H	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	.	A	S	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y	L
Template Known Secondary structure		T	B										T	T	T	T										S												.
Template Predicted Secondary structure																																						.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		E	E	R	R	V	V	H	R	D	L	A	A	R	N	V	L	V	G	D	D	L	.	.	.	.	T	C	K	V	A	D	F	G	L	A	R	L	L	K	D	D	V	Y	S	P	S	S	G	S	K	I	P	V	K	W	T	A	P	E	A
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	N	W	V	L	H	R	D	L	K	P	A	N	I	L	V	M	G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	R	V	T	F	W	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	P	E	L	L
Template Known Secondary structure				T	T								G	G	G						S	S	T	T	T	T							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.														.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.								.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		A	N	Y	R	V	F	S	Q	K	S	D	V	W	S	F	G	I	L	L	Y	E	V	F	T	Y	G	Q	C	P	Y	E	G	M	T	.	.	.	.	.	.	.	N	H	E	T	L	Q	Q	I	S	R	G	Y	R	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence																										.										.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation																										.
Template Sequence		L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A	E	L	L	T	.	S	E	P	I	F	H	C	R	Q	N	P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D	I
Template Known Secondary structure		T	T			S																				.	S	S		T	T																								T	T	T		G	G	G
Template Predicted Secondary structure																										.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
																													449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	R	P	A	V	C	P	A	E	V	Y	V	L	M	V	E	C	W	K	G	S	P	E	E	R	P	T	F	A	I	L	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H	L	L	Q	K	L	L	T	M	D	P	I	K	R	I	T	S	E	Q	A	M
Template Known Secondary structure		G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S										S		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		482
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		331

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D