 |
| Job Description | Q8R4L0 | | Confidence | 99.06% | Date | Tue Jul 30 13:18:27 BST 2013 |
| Rank | 132 | Aligned Residues | 78 |
| % Identity | 17% | Template | c3nmzD_ |
| PDB info |
PDB header:cell adhesion/cell cycle | Chain: D: PDB Molecule:rho guanine nucleotide exchange factor 4; |
PDBTitle: crytal structure of apc complexed with asef
|
| Resolution | 3.01 Å |
|
 |
|   |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
P | S | P | S | S | S | G | P | D | Q | E | P | V | S | M | Q | P | E | R | H | K | V | T | A | V | A | L | G | S | F | P | A | G | E | Q | A | R | L | S | L | R | L | G | E | P | L | T | I | I | S | E | D | G | D | W | W | T | V | Q | S |
| Query Conservation |   |
  |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |
|
|
|   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |
|
|
|
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |
|
|   |
|   |
| Template Sequence |   |
S | H | P | G | G | G | G | E | Q | L | A | I | N | E | L | I | S | D | G | S | V | V | C | A | E | A | L | W | D | H | V | T | M | D | D | Q | E | L | G | F | K | A | G | D | V | I | E | V | M | D | A | T | N | R | E | W | W | W | G | R |
| Template Known Secondary structure |   |
|
|
| S |
| S |
|
|
|
| S |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  | S | S |
| B |
|
|
|
| T | T | B |
|
| B |
| T | T |
|  |  |  |  |  |  |
|
| S | S | S |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . |
|   |
|   |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
E | V | S | G | R | E | Y | H | M | P | S | V | Y | V | A | K | V | A | H |
| Query Conservation |   |
  |   |
|
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |   |
| Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
. |   |   |
|   |   |
|   |
|
|   |   |
|
|   |
|   |   |   |
| Template Sequence |   |
. |
V | A | D | G | E | G | W | F | P | A | S | F | V | R | L | R | V | N |
| Template Known Secondary structure |   |
. |
| S | S |
|  |  |  |  |  | G | G | G |  |  |  |
|
| S |
| Template Predicted Secondary structure |   |
. |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
236 | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|