Phyre 2 alignment of Q8R4L0 with c2epdA_

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Job Description | Q8R4L0
Confidence | 98.83% | Date | Tue Jul 30 13:18:27 BST 2013
Rank | 233 | Aligned Residues | 64
% Identity | 23% | Template | c2epdA_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:rho gtpase-activating protein 4; | PDBTitle: solution structure of sh3 domain in rho-gtpase-activating2 protein 4
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | M | Q | P | E | R | H | K | V | T | A | V | A | L | G | S | F | P | A | G | E | Q | A | R | L | S | L | R | L | G | E | P | L | T | I | I | S | E | D | G | D | W | W | T | V | Q | S | E | V | S | G | R | E | Y | H | M | P | S | V | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | G | S | S | G | E | G | V | V | E | A | V | A | C | F | A | Y | T | G | R | T | A | Q | E | L | S | F | R | R | G | D | V | L | R | L | H | E | R | A | S | S | D | W | W | R | G | E | H | . | N | G | M | R | G | L | I | P | H | K | Y
Template Known Secondary structure |  |  |  |  | S | S | S |  |  |  |  |  |  |  | S | S |  |  |  |  | S | S | T | T | B |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | . | T | T |  |  |  |  |  |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 741 | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . |  | . | 790 | . | . | . | . | . | . | . | . | .
|  | 86 | . | . | . | 90
Predicted Secondary structure |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |
Query Sequence |  | V | A | K | V | A
Query Conservation |  |  |  |  |  |
Alig confidence |  |  |  |  |  |
Template Conservation |  |  |  |  |  |
Template Sequence |  | I | T | L | P | A
Template Known Secondary structure |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |
|  | 800 | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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