Phyre 2 alignment of Q8R4L0 with c3o27B_

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Job Description | Q8R4L0
Confidence | 32.93% | Date | Tue Jul 30 13:18:27 BST 2013
Rank | 369 | Aligned Residues | 52
% Identity | 23% | Template | c3o27B_
PDB info | PDB header:dna binding protein | Chain: B: PDB Molecule:putative uncharacterized protein; | PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | A | K | V | A | H | G | W | L | Y | E | G | L | S | R | E | K | A | E | E | L | L | L | L | P | G | N | P | G | G | A | F | L | I | R | E | S | Q | T | R | R | G | C | Y | S | L | S | V | R | L | S | R | P | A | S | W | D | R | I | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |
Template Sequence |  | V | V | L | N | P | R | A | T | F | Y | L | L | I | P | K | D | I | A | E | A | L | D | . | . | . | I | K | P | D | D | T | F | I | L | N | M | E | . | Q | K | D | G | D | I | V | L | S | Y | K | . | . | . | . | . | . | . | . | R | V | K
Template Known Secondary structure |  |  |  |  |  |  | B |  |  |  | B |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . |  |  | T | T |  |  |  |  |  |  |  |  | . |  |  | T | T |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 |  |  |  | . | . | . | . | . | . | . | . | . | 40 | . | . |  | . | . | . | . | . | . | . | 50 | . | . | . |  |  |  |  |  |  |  |  | . | . | .
|  | 146 | . | . | .
Predicted Secondary structure |  |  |  |  |
Query SS confidence |  |  |  |  |
Query Sequence |  | H | Y | R | I
Query Conservation |  |  |  |  |
Alig confidence |  |  |  |  |
Template Conservation |  |  |  |  |
Template Sequence |  | E | L | K | I
Template Known Secondary structure |  | S |  |  |
Template Predicted Secondary structure |  |  |  |  |
Template SS confidence |  |  |  |  |
|  | 65 | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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