Phyre 2 alignment of Q8R4L0 with c1t0jA_

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Job Description | Q8R4L0
Confidence | 98.46% | Date | Tue Jul 30 13:18:27 BST 2013
Rank | 295 | Aligned Residues | 59
% Identity | 17% | Template | c1t0jA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a; | PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |  | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | Q | P | E | R | H | K | V | T | A | V | A | L | G | S | F | P | A | G | E | Q | A | R | . | . | . | . | . | . | . | L | S | L | R | L | G | E | P | L | T | I | I | S | E | . | D | G | D | W | W | T | V | Q | S | E | V | S | G | R | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | K | T | K | P | V | A | F | A | V | R | T | N | V | R | Y | S | A | A | Q | E | D | D | V | P | V | P | G | M | A | I | S | F | E | A | K | D | F | L | H | V | K | E | K | F | N | N | D | W | W | I | G | R | L | V | K | E | G | C | E
Template Known Secondary structure |  |  | T | T | S |  |  |  |  |  |  |  |  | S | S |  | B |  |  |  | G | G | G |  |  | S | S | T | T |  | B |  |  | B |  | T | T |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | S | S | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | .
|  |  | 79 | 80 | . | . | . | . | .
Predicted Secondary structure |  | . |  |  |  |  |  |  |
Query SS confidence |  | . |  |  |  |  |  |  |
Query Sequence |  | . | Y | H | M | P | S | V | Y
Query Conservation |  | . |  |  |  |  |  |  |
Alig confidence |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |
Template Sequence |  | I | G | F | I | P | S | P | V
Template Known Secondary structure |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |
|  | 115 | . | . | . | . | 120 | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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