Job Description P27870 Confidence 100.00% Date Tue Jul 30 13:02:10 BST 2013 Rank 17 Aligned Residues 290 % Identity 17% Template c3mpxA_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:fyve, rhogef and ph domain-containing protein 5; PDBTitle: crystal structure of the dh and ph-1 domains of human fgd5 Resolution 2.80 Å Model Dimensions (Å) X:69.356 Y:63.358 Z:48.988

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.										.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.
Query Sequence		D	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	M	K	P	L	.	.	.	.	.	.	.	.	.	Q	R	F	L	K	P	Q	D	M	E	T	I	F	V	N	I	E	E	L
Query Conservation																																		.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	A	L	V	I	A	Q	E	L	L	S	S	E	K	A	Y	V	E	X	L	Q	H	L	N	L	D	F	H	G	A	V	X	R	A	L	D	D	X	D	H	E	D	T	L	A	R	E	E	L	R	Q	G	L	S	E	L	P	A	I
Template Known Secondary structure																													T												T	T
Template Predicted Secondary structure
Template SS confidence
		891	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		F	S	V	H	T	H	F	L	K	E	L	K	D	A	L	A	G	P	G	A	T	T	.	L	Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S	K	H	L	D	Q	V	A	T	A	R	E
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		H	D	L	H	Q	G	I	L	E	E	L	E	E	R	L	S	N	W	E	S	Q	Q	K	V	A	D	V	F	L	A	R	E	Q	G	F	D	H	H	A	T	H	I	L	Q	F	D	R	Y	L	G	L	L	S	E	N	C	L	H	S	P
Template Known Secondary structure																		T	T	T	T					T					T	T	T	T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		953	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H	T	Q	.	D	A	T	E	K	E	N	L	R	L	A	L	D
Query Conservation																																																.
Alig confidence												.	.	.	.	.	.																															.
Template Conservation												.	.	.	.	.	.
Template Sequence		R	L	A	A	A	V	R	E	F	E	.	.	.	.	.	.	Q	S	T	A	K	H	R	L	L	R	V	V	Q	R	L	F	Q	Y	Q	V	L	L	T	D	Y	L	N	N	L	C	P	D	S	A	E	Y	D	N	T	Q	G	A	L	S
Template Known Secondary structure												.	.	.	.	.	.	T																										T	T	S		T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		1013	.	.	.	.	.	.	1020	.	.							.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	D	Q	S	L	A	N	Y	G	R	P	K	I	D	G	E	L	K	I	T	S	V	E	R	R	S	K	T	D
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		L	I	S	K	V	T	D	R	A	N	D	S	X	E	Q	G	E	N	L	Q	K	L	V	H	I	E	H	S	V	R	G	Q	G	D	L	L	Q	P	G	R	E	F	L	K	E	G	T	L	X	K	V	T	.	.	G	K	N	R	R	P
Template Known Secondary structure															T	T																T							T	T														.	.	T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		1073	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.			.	.	.	.	.	1130
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		R	Y	A	F	L	L	D	K	A	L	L	I	C	K	R	R	G	D	S	.	Y	D	L	K	A	S	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	E	R	D	N	K	K	W	S	H	M	F	L	L	I	E	D	Q	G	A	Q
Query Conservation																					.
Alig confidence																					.													.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		R	H	L	F	L	X	N	D	V	L	L	Y	T	Y	P	Q	K	D	G	K	Y	R	L	K	N	T	L	A	V	S	R	P	.	.	.	.	.	.	.	.	.	.	V	X	E	K	V	P	Y	A	L	K	I	E	T	S	E	.	.	S
Template Known Secondary structure								S	S									T	T	S														.	.	.	.	.	.	.	.	.	.			T	T	S		S							S	S	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		1131	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.											.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.			.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	E	L	F	F	K	T	R	E	L	K	K	K	W	M	E	Q	F	E	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	L	X	L	S	A	S	S	C	A	E	R	D	E	W	Y	G	C	L	S	R	A
Template Known Secondary structure								S	S
Template Predicted Secondary structure
Template SS confidence
		1184	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D