Job Description P27870 Confidence 97.62% Date Tue Jul 30 13:02:10 BST 2013 Rank 378 Aligned Residues 100 % Identity 20% Template c1ka6A_ PDB info PDB header:immune system Chain: A: PDB Molecule:sh2 domain protein 1a; PDBTitle: sap/sh2d1a bound to peptide n-py Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		L	S	V	H	L	W	Y	A	G	P	M	E	R	A	G	A	E	G	I	L	T	N	R	S	.	D	G	T	Y	L	V	R	Q	R	V	K	D	T	A	E	F	A	I	S	I	K	Y	N	V	E	V	K	H	I	K	I	M	T	S	E
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		M	D	A	V	A	V	Y	H	G	K	I	S	R	E	T	G	E	K	L	L	L	A	T	G	L	D	G	S	Y	L	L	R	D	S	E	S	V	P	G	V	Y	C	L	C	V	L	Y	H	G	Y	I	Y	T	Y	R	V	S	Q	T	E
Template Known Secondary structure						S	S	B			S																T	T								S	S	S	T	T								S	S	S											T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		725	.	.	.	.							730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		G	L	Y	R	I	.	.	.	.	.	.	T	E	K	K	A	F	R	G	L	L	E	L	V	E	F	Y	Q	Q	N	S	L	K	D	C	F	K	S	L	D	T	T	L	Q	F	P	Y	K	E	P	E	R
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		T	G	S	W	S	A	E	T	A	P	G	V	H	K	R	Y	F	R	K	I	K	N	L	I	S	A	F	Q	K	P	D	Q	.	.	.	.	.	G	I	V	I	P	L	Q	Y	P	V	E	K	K	S	S
Template Known Secondary structure		T	S							S	T	T	S						S	S								T	T	S	S		S	.	.	.	.	.	S	S	S	S				S	B			S	S
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D