Job Description P27870 Confidence 100.00% Date Tue Jul 30 13:02:10 BST 2013 Rank 14 Aligned Residues 320 % Identity 23% Template c1foeA_ PDB info PDB header:signaling protein, immune system/signali Chain: A: PDB Molecule:t-lymphoma invasion and metastasis inducing PDBTitle: crystal structure of rac1 in complex with the guanine2 nucleotide exchange region of tiam1 Resolution 2.80 Å Model Dimensions (Å) X:74.822 Y:61.102 Z:44.216

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		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		K	M	T	E	Y	D	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	M	K	P	L	Q	R	.	.	F	L	K	P	Q	D	M	E	T	I	F	V	N	I	E	E	L	F	S
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		Q	L	S	D	A	D	K	L	R	K	V	I	C	E	L	L	E	T	E	R	T	Y	V	K	D	L	N	C	L	X	E	R	Y	L	K	P	L	Q	K	E	T	F	L	T	Q	D	E	L	D	V	L	F	G	N	L	T	E	X	V	E
Template Known Secondary structure																																		T						T	S	S	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.															.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	T	H	F	L	K	E	L	K	D	A	L	A	G	P	G	A	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	V	E	F	L	K	T	L	E	D	G	V	R	L	V	P	D	L	E	K	L	E	K	V	D	Q	F	K	K	V	L	F	S	L	G	G	S	F	L	Y	Y	A	D	R	F	K	L	Y	S	A	F	C	A	S	H	T	K	V	P
Template Known Secondary structure															T	T	S	S		G	G	G			S	G	G	G	G															T	T	G	G	G	G								T	T	T
Template Predicted Secondary structure
Template SS confidence
		1094	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		K	H	L	D	Q	V	A	T	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H	T	Q	.	D	A
Query Conservation																																																											.
Alig confidence								.																		.																																	.
Template Conservation								.																		.
Template Sequence		K	V	L	V	K	A	.	K	T	D	T	A	F	K	A	F	L	D	A	Q	N	P	R	Q	.	Q	H	S	S	T	L	E	S	Y	L	I	K	P	I	Q	R	V	L	K	Y	P	L	L	L	R	E	L	F	A	L	T	D	A	E	S
Template Known Secondary structure					T	T	T	.	T	T													T	T		.		G	G	G	S					T	T							T	T											T	S		T	T	S
Template Predicted Secondary structure								.																		.
Template SS confidence
		1154	.	.	.	.	.		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.		.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.				.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		T	E	K	E	N	L	R	L	A	L	D	A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	.	.	.	D	Q	S	L	A	N	Y	G	R	P	K	I	D	G
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence		E	E	H	Y	H	L	D	V	A	I	K	T	X	N	K	V	A	S	H	I	N	E	X	Q	K	I	H	E	E	F	G	A	V	F	D	Q	L	I	A	E	Q	T	G	E	K	K	E	V	A	D	L	S	X	G	D	L	L	L	H	T
Template Known Secondary structure																																								T	T		S	S		S		S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.
		408	.	410	.	.	.	.						.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																				.	.	.	.	440	.	.	.
Predicted Secondary structure									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	K	I	T	S	V	.	.	.	.	.	E	R	R	S	K	T	D	R	Y	A	F	L	L	D	K	A	L	L	I	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	G	D	S	Y	D	L
Query Conservation									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	I	W	L	N	P	P	A	S	L	G	K	W	K	K	E	P	E	L	A	A	F	V	F	K	T	A	V	V	L	V	Y	K	D	G	S	K	Q	K	K	K	L	V	G	S	H	R	L	S	I	Y	E	E	W	D	P	F	R	F
Template Known Secondary structure						S	S							T	T		S	S									T	T												S			S	S				T	T	T	T		S	S		S		S
Template Predicted Secondary structure
Template SS confidence
		1272	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.				.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		K	A	S	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	E	R	D	N	K	K	W	S	H	M	F	L	L	I	E	D	.	.	.	Q	G	A	Q	G	Y	E	L	F	F	K	T	R	E	L	K	K	K	W	M	E	Q	F	E
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.
Template Conservation
Template Sequence		R	H	X	I	P	T	E	A	L	Q	V	R	A	L	P	S	A	D	A	E	A	N	A	V	C	E	I	V	H	V	K	S	E	S	E	G	R	P	E	R	V	F	H	L	C	C	S	S	P	E	S	R	K	D	F	L	K	S	V	H
Template Known Secondary structure							G	G	G									T	T	T	T	S											B	T	G	G	G	B										S	S
Template Predicted Secondary structure
Template SS confidence
		1332	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.
		501	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	I	S	N	I	Y	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	L	R	D	K	H	R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1392	.	.	.	.	.	.	.	1400

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D