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Job DescriptionQ64434
Confidence100.00%DateWed Jul 10 14:13:37 BST 2013
Rank192Aligned Residues240
% Identity23%Templatec3dbqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dual specificity protein kinase ttk; PDBTitle: crystal structure of ttk kinase domain
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.........210.........220.... .....230.........240..
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Query Sequence  ERPREEFTLCKKLGAGYFGEVFEALWKGQVHVAVKVISRD. . NLLHQHTFQAEIQAMKKL
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Template Sequence  SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL
Template Known Secondary structure  SSS
S

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TT

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   519520.........530.........540.........550.........560.........570........
 
   243 ......250.........260.........270.........280.........290.........300
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Query Sequence  R. . HKHILSLYAVATAGDPVYIITELMPKGNLLQLLRDSDEKALPILELVDFASQVAEGM
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Template Sequence  QQHSDKIIRLYDYEITDQYIYMVMECGN. IDLNSWLKKK. . KSIDPWERKSYWKNMLEAV
Template Known Secondary structure  TTT
TTB


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   579580.........590.........600...... ...610...... ...620.........630.....
 
   301........310.........320.........330.........340.........350.........360
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Query Sequence  CYLESQNYIHRDLAARNVLVTENNLCKVGDFGLARLVKEDIYLSHEHNVPYKWTAPEALS
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Template Sequence  HTIHQHGIVHSDLKPANFLIV. DGMLKLIDFGIA. . . . . . . . . . NQMVGTVNYMPPEAIK
Template Known Secondary structure  TT






GGG.TT


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   636...640.........650...... ...660........ .670.........680....
 
   361........370.........380.........390.. .......400.........410........
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Query Sequence  RGHYSIKSDVWSFGVLLHEIFSRGQMPYPGMS. . NHETFLRVDAGYRMPCPLECPPNIHK
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Template Sequence  DMSISPKSDVWSLGCILYYMTY. GKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD
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   697..700.........710........ .720.........730.........740.........750.....
 
   419420.........430.........
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Query Sequence  LMLSCWSRDPKQRPCFKDLCE
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Template Sequence  VLKCCLKRDPKQRISIPELLA
Template Known Secondary structure  T
SSTTTS

T
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   767..770.........780.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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