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Job DescriptionP35991
Confidence100.00%DateWed Jul 10 14:27:18 BST 2013
Rank152Aligned Residues245
% Identity22%Templatec3ku2A_
PDB info PDB header:transferaseChain: A: PDB Molecule:calmodulin-domain protein kinase 1; PDBTitle: crystal structure of inactivated form of cdpk1 from toxoplasma gondii,2 tgme49.101440
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   400.........410.........420.. .......430... ......440.........450....
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Query Sequence  KDLTFLKELGTGQFGVVKYGKWR. GQYDVAIKMIR. . . . EGSMSEDEFIEEAKVMMNLSH
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Template Sequence  DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDH
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   4950.........60.........70.........80.........90.........100........
 
   455....460.........470.........480.........490.........500.........510....
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Query Sequence  EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES
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Template Sequence  PNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI. ISRKRFSEVDAARIIRQVLSGITYMHK
Template Known Secondary structure  TTB


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   109110.........120.........130.........140 .........150.........160.......
 
   515....520......... 530.........540.........550.........560.........570.
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Query Sequence  KQFLHRDLAARNCLV. . . NDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMY
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Template Sequence  NKIVHRDLKPENLLLESKSKDANIRIIDFGLS. . THFEASKKMKDKIGTAYYIAPEVLH.
Template Known Secondary structure  TT


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   168.170.........180.........190......... 200.........210.........220....
 
   572.......580.........590.........600.........610... ......620........
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Query Sequence  SKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG. . . LRLYRPHLASERVYT
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Template Sequence  GTYDEKCDVWSTGVILYILLS. GCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKD
Template Known Secondary structure  S


T.SS
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SGGGGGS
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   225....230.........240..... ....250.........260.........270.........280...
 
   629630.........640.........
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Query Sequence  IMYSCWHEKADERPSFKILLS
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Template Sequence  LIRKMLTYVPSMRISARDALD
Template Known Secondary structure  T
SSTTTS

T
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   284.....290.........300....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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