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Job DescriptionP35991
Confidence100.00%DateWed Jul 10 14:27:18 BST 2013
Rank138Aligned Residues248
% Identity22%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   397..400.........410.........420.. .......430... ......440.........450.
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Query Sequence  IDPKDLTFLKELGTGQFGVVKYGKWR. GQYDVAIKMIR. . . . EGSMSEDEFIEEAKVMMN
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ
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STT
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GGG

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   240.........250.........260.........270.........280.........290.........
 
   452.......460.........470.........480.........490.........500.........510
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Query Sequence  . LSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAME
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Template Sequence  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHM. QRQRKLPEEHARFYSAEISLALN
Template Known Secondary structure  TTSSTTB


B
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   300.........310.........320.........330..... ....340.........350........
 
   511........520.........530.........540.........550.........560.........570
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Query Sequence  YLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLM
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Template Sequence  YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSFCGT. . PNYIAPEILR
Template Known Secondary structure  TT
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GGG
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TT
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TT

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   359360.........370.........380.........390.........400...... ...410......
 
   571........580.........590.........600.........610.........620.........630
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Query Sequence  YSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASERVYTIM
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Template Sequence  GEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILE. KQIRIPRSMSVKAASVL
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   418.420.........430......... 440.........450........ .460.........470.....
 
   631........640... ......
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Query Sequence  YSCWHEKADERPS. . . . . . FKILLS
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Template Sequence  KSFLNKDPKERLGCLPQTGFADIQG
Template Known Secondary structure  T
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   485....490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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