Job Description P15498 Confidence 100.00% Date Fri May 25 09:26:45 BST 2012 Rank 16 Aligned Residues 306 % Identity 24% Template c3odwB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of the linker-dh/ph domains of p115-rhogef Resolution 3.20 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.						.	.
Predicted Secondary structure																																			.	.																																							.	.	.	.	.
Query SS confidence																																			.	.																																							.	.	.	.	.
Query Sequence		K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	L	K	P	L	Q	R	.	.	F	L	K	P	Q	D	I	E	I	I	F	I	N	I	E	D	L	L	R	V	H	T	H	F	L	K	E	M	K	E	A	L	G	T	P	G	A	A	.	.	.	.	.	N	L
Query Conservation																																			.	.																																							.	.	.	.	.
Alig confidence																																			.	.																																							.	.	.	.	.
Template Conservation
Template Sequence		K	R	Q	E	V	I	S	E	L	L	V	T	E	A	A	H	V	R	M	L	R	V	L	H	D	L	F	F	Q	P	M	A	E	C	L	F	F	P	L	E	E	L	Q	N	I	F	P	S	L	D	E	L	I	E	V	H	S	L	F	L	D	R	L	M	K	R	R	Q	E	S	I	E	E	I	G	D	V	L	L	A
Template Known Secondary structure																												T								T	S	S									S	T	T																					T
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S	K	H	L	D	R	V	A	A	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	D	G	A	E	G	S	W	F	Q	K	I	S	S	R	F	C	S	R	Q	S	F	A	L	E	Q	L	K	A	K	Q	R	K	D	P	R	F	C	A	F	V	Q	E	A	E	S	R	P	R	C	R	R	L	Q	L	K	D	M	I	P	T	E	M	Q	R	L	T	K	Y	P	L	L	L	Q	S	I	G	Q	N
Template Known Secondary structure				S																	T																											T	S	G	G	G	T	T							T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																																	.	.										.
Query SS confidence																																																	.	.										.
Query Sequence		T	Q	E	A	M	E	K	E	N	L	R	L	A	L	D	A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	.	.	D	Q	S	L	A	H	Y	G	R	.	P	K	I	D	G	E	L	K	I	T	S	V	E	R	R	S	K	M	D	R	Y
Query Conservation																																																	.	.										.
Alig confidence																																																	.	.										.
Template Conservation
Template Sequence		T	E	E	P	T	E	R	E	K	V	E	L	A	A	E	C	C	R	E	I	L	H	H	V	N	Q	A	V	R	D	M	E	D	L	L	R	L	K	D	Y	Q	R	R	L	D	L	S	H	L	R	Q	S	L	S	E	F	K	N	L	D	I	T	K	K	K	L	V	H	E	G	P	L	T	W	R	V	T	K	V	H
Template Known Secondary structure				S																																												T	T	T	T	T			T	T	S	S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		579	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440				.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		A	F	L	L	D	K	A	L	L	I	C	K	R	R	G	D	S	.	.	.	Y	D	L	K	D	F	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	D	R	D	N	K	K	W	S	H	M	F	L	L	I	E	D	Q	G	A	Q	G	Y	E	L	F	F	K	T	R	E	L	K	K	K	W	M	E	Q	F	E
Query Conservation																			.	.	.
Alig confidence																			.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.
Template Sequence		V	L	L	L	D	D	L	L	L	L	L	Q	R	Q	D	E	R	L	L	L	K	S	L	R	P	V	L	R	L	T	S	A	M	T	R	E	V	A	T	D	H	K	.	.	.	.	.	.	.	.	A	F	Y	V	L	F	T	E	A	Q	I	Y	E	L	V	A	Q	T	V	S	E	R	K	N	W	C	A	L	I	T
Template Known Secondary structure						S	S									T	T									S				G	G	G							T	T		T	T	.	.	.	.	.	.	.	.																	S	S	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.									710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
		501	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	I	S	N	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	A	G	S	L	K
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		757	.	.	760	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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