Job Description P15498 Confidence 100.00% Date Fri May 25 09:26:45 BST 2012 Rank 17 Aligned Residues 297 % Identity 21% Template c2z0qA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 3; PDBTitle: crystal structure of dh-ph domain of rhogef3(xpln) Resolution 1.79 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.
Predicted Secondary structure																																								.	.																																						.
Query SS confidence																																								.	.																																						.
Query Sequence		M	T	E	Y	D	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	L	K	P	L	Q	R	.	.	F	L	K	P	Q	D	I	E	I	I	F	I	N	I	E	D	L	L	R	V	H	T	H	F	L	K	E	M	K	E	A	L	G	T	P	G	A	.	A	N
Query Conservation																																								.	.																																						.
Alig confidence																																								.	.																																						.
Template Conservation
Template Sequence		T	A	K	E	I	K	R	Q	E	A	I	F	E	L	S	Q	G	E	E	D	L	I	E	D	L	K	L	A	K	K	A	Y	H	D	P	X	L	K	L	S	I	X	T	E	Q	E	L	N	Q	I	F	G	T	L	D	S	L	I	P	L	H	E	E	L	L	S	Q	L	R	D	V	R	K	P	D	G	S	T	E	H
Template Known Secondary structure																																	T							T	T	S	S										T	T																					T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S	K	H	L	D	R	V	A	A	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	P	I	L	V	G	W	L	P	C	L	S	S	Y	D	S	Y	C	S	N	Q	V	A	A	K	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	K	K	Q	D	H	R	V	Q	D	F	D	L	W	N	F	L	D	I	P	R	S	R	L	V	K	Y	P	L	L	L	R	E	I	L	R
Template Known Secondary structure										G	G	G	G	G																	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T									T	T	T	G	G	G
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.															.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		346	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure					.																																																							.
Query SS confidence					.																																																							.
Query Sequence		H	T	Q	.	E	A	M	E	K	E	N	L	R	L	A	L	D	A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	D	Q	S	L	A	H	Y	G	R	.	P	K	I	D	G	E	L	K	I	T	S	V	E	R	R	S	K	M	D	R	Y
Query Conservation					.																																																							.
Alig confidence					.																																																							.									.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		H	T	P	N	D	N	P	D	Q	Q	H	L	E	E	A	I	N	I	I	Q	G	I	V	A	E	I	N	T	K	T	G	E	S	E	C	R	Y	Y	K	E	R	L	L	Y	L	E	E	G	Q	K	D	S	L	I	D	S	S	R	V	L	C	C	H	G	E	L	K	.	.	.	.	.	N	N	R	G	V	K	L	H
Template Known Secondary structure		T	S		T	T	S	T																																							S	T	T								T												.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.						.	.	.	.	.	.	.	240
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440						.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460												.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	L	L	D	K	A	L	L	I	C	K	R	R	G	D	S	.	.	.	.	.	Y	D	L	K	D	F	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	.	.	.	.	.	.	.	.	.	.	.	D	R	D	N	K	K	W	S	H	M	F	L	L	I	E	D	Q	G	A	Q	G	Y	E	L	F	F	K
Query Conservation																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	L	F	Q	E	V	L	V	I	T	R	A	V	T	H	N	E	Q	L	C	Y	Q	L	Y	R	Q	P	I	P	V	K	D	L	T	L	E	D	L	Q	D	G	E	V	R	L	G	G	S	L	A	F	S	N	N	E	R	V	K	N	F	F	R	V	S	F	K	N	G	S	Q	S	Q	T	H	S	L	Q	A	N
Template Known Secondary structure						S	S											T	T							S	S					G	G	G								T	T	T	S				S					S					T	S	S									G	G	G									S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	E	L	K	K	K	W	M	E	Q	F	E	M	A	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	F	N	K	Q	Q	W	L	N	C	I	R	Q	A	K	E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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