Job Description P15498 Confidence 100.00% Date Fri May 25 09:26:45 BST 2012 Rank 5 Aligned Residues 351 % Identity 23% Template c2dx1A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crystal structure of rhogef protein asef Resolution 2.36 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.								.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																					.	.	.	.	.	.	.																					.
Query SS confidence																																					.	.	.	.	.	.	.																					.
Query Sequence		E	D	I	Y	S	G	L	S	D	Q	I	D	D	T	V	E	E	D	E	D	L	Y	D	C	V	E	N	E	E	A	E	G	D	E	I	.	.	.	.	.	.	.	Y	E	D	L	M	R	S	E	P	V	S	M	P	P	K	M	T	E	Y	D	.	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T
Query Conservation																																					.	.	.	.	.	.	.																					.
Alig confidence																																					.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		E	A	L	W	D	H	V	T	X	D	D	Q	E	L	G	F	K	A	G	D	V	I	E	V	X	D	A	T	N	R	E	W	W	W	G	R	V	A	D	G	E	G	W	F	P	A	S	F	V	R	L	R	V	N	Q	D	A	Q	S	S	K	D	Q	X	R	T	N	V	I	N	E	I	L	S	T	E	R	D	Y	I
Template Known Secondary structure				S	S		B					T	T	B			B		T	T										S	S	S							S	S							G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																		.	.	.																																						.	.
Query SS confidence																		.	.	.																																						.	.
Query Sequence		D	T	L	G	S	I	Q	Q	H	F	L	K	P	L	Q	R	.	.	.	F	L	K	P	Q	D	I	E	I	I	F	I	N	I	E	D	L	L	R	V	H	T	H	F	L	K	E	M	K	E	A	L	G	T	P	G	A	.	.	A	N	L	Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S
Query Conservation																		.	.	.																																						.	.
Alig confidence																		.	.	.																																						.	.
Template Conservation
Template Sequence		K	H	L	R	D	I	C	E	G	Y	V	R	Q	C	R	K	R	A	D	X	F	S	E	E	Q	L	R	T	I	F	G	N	I	E	D	I	Y	R	C	Q	K	A	F	V	K	A	L	E	Q	R	F	N	R	E	R	P	H	L	S	E	L	G	A	C	F	L	E	H	Q	A	D	F	Q	I	Y	S	E	Y	C	N
Template Known Secondary structure											T					T	T		T	T	T											T	T																	T	T			S	S	S	G	G	G										T						T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		Q	V	E	S	A	S	K	H	L	D	R	V	A	A	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H	T	Q	.	E	A	M	E	K	E	N	L	R	L	A	L	D	A	M	R
Query Conservation																																																																	.
Alig confidence															.																																																		.
Template Conservation															.
Template Sequence		N	H	P	N	A	C	V	E	L	S	R	L	T	.	K	L	S	K	Y	V	Y	F	F	E	A	C	R	L	L	Q	K	X	I	D	I	S	L	D	G	F	L	L	T	P	V	Q	K	I	C	K	Y	P	L	Q	L	A	E	L	L	K	Y	T	H	P	Q	H	R	D	F	K	D	V	E	A	A	L	H	A	X	K
Template Known Secondary structure															.	T																T			S																											T	S		T	T		T	T
Template Predicted Secondary structure															.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.				.	.	.
Predicted Secondary structure																																		.	.																																									.	.	.
Query SS confidence																																		.	.																																									.	.	.
Query Sequence		D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	D	Q	S	.	.	L	A	H	Y	G	R	P	K	I	D	G	E	L	K	I	T	S	V	E	R	R	S	K	M	D	R	Y	A	F	L	L	D	K	A	L	L	I	C	K	R	.	.	.	R	G	D
Query Conservation																																		.	.																																									.	.	.
Alig confidence																																		.	.																																									.	.	.
Template Conservation
Template Sequence		N	V	A	Q	L	I	N	E	R	K	R	R	L	E	N	I	D	K	I	A	Q	W	Q	S	S	I	E	D	W	E	G	E	D	L	L	V	R	S	S	E	L	I	Y	S	G	E	L	T	R	V	T	Q	P	Q	A	K	S	Q	Q	R	X	F	F	L	F	D	H	Q	L	I	Y	C	K	K	D	L	L	R	R	D
Template Known Secondary structure																											S	B	S			S	S																				S	S	S	S											T	T									T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	D	L	K	D	F	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	D	R	D	N	K	K	W	S	H	M	F	L	L	I	E	D	Q	G	A	Q	G	Y	E	L	F	F	K	T	R	E	L	K	K	K	W	M	E	Q	F	E	M	A	I	S	N	I	Y
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	Y	Y	K	G	R	L	D	X	D	G	L	E	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	N	A	F	R	L	H	S	H	L	L	C	T	R	K	P	E	Q	K	Q	R	W	L	K	A	F	A	R	E	R	E	Q	V	Q
Template Known Secondary structure											T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.																		.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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