Phyre 2 alignment of P15498 with c1ntyA

Job Description P15498
Confidence 100.00% Date Fri May 25 09:26:45 BST 2012

Rank 21 Aligned Residues 288

% Identity 18% Template c1ntyA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:triple functional domain protein; PDBTitle: crystal structure of the first dh/ph domain of trio to 1.7 a

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	L	K	P	L	Q	R	.	.	.	.	.	.	F	L	K	P	Q	D	I	E	I	I	F	I	N	I	E	D	L	L	R	V	H	T	H	F	L	K	E	M	K	E	A	L	G	T	P	G	A	A	N	L	Y
Query Conservation																																		.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.																																.
Template Conservation																																																																							.
Template Sequence	R	K	E	F	I	M	A	E	L	I	Q	T	E	K	A	Y	V	R	D	L	R	E	C	M	D	T	Y	L	W	E	M	T	S	G	V	E	E	I	P	P	G	I	V	N	K	E	L	I	I	F	G	N	M	Q	E	I	Y	E	F	H	N	N	I	F	L	K	E	L	E	K	.	Y	E	Q	L	P	E	D	V	G
Template Known Secondary structure																																				S				T	T	T	T	T							T	T											T								.	T	T	T		G	G	G	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
	1233	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.		.	.	.	.	.	.	.	1310	.

	268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S	K	H	L	D	R	V	A	A	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L	L	Q	E	L	V	K	H	T
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence	H	C	F	V	T	W	A	D	K	F	Q	M	Y	V	T	Y	C	K	N	K	P	D	S	T	Q	L	I	L	E	H	A	G	S	.	.	.	.	.	.	.	Y	F	D	E	I	Q	Q	R	H	G	L	A	N	S	I	S	S	Y	L	I	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E	L	L	T	C	C
Template Known Secondary structure						T	T	T	T	T																					T	T	T	.	.	.	.	.	.	.										T		S	S							T																			T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
	1312	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.								.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.

	348		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.
Predicted Secondary structure		.																																																																									.	.
Query SS confidence		.																																																																									.	.
Query Sequence	Q	.	E	A	M	E	K	E	N	L	R	L	A	L	D	A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	D	Q	S	L	A	H	Y	G	R	P	K	I	D	G	E	L	K	I	T	S	V	E	R	R	S	K	M	.	.	D	R	Y	A
Query Conservation		.																																																																									.	.
Alig confidence		.					.	.	.																								.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation							.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	E	G	K	G	E	.	.	.	I	K	D	G	L	E	V	M	L	S	V	P	K	R	A	N	D	A	M	H	L	S	M	.	.	.	.	.	.	.	.	.	.	.	L	E	G	F	D	E	N	I	E	S	Q	G	E	L	I	L	Q	E	S	F	Q	V	W	D	P	K	T	L	I	R	K	G	R	E	R	H	L
Template Known Secondary structure		T	T		T	T	.	.	.																						T	T	.	.	.	.	.	.	.	.	.	.	.			S			S		S	G	G	G														S	S	S	S	S
Template Predicted Secondary structure							.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1385	.	.	.	.	1390				.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.												.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450

	425	.	.	.	.	430	.	.	.	.	.	.						.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																							.
Query SS confidence													.	.	.	.	.																																							.
Query Sequence	F	L	L	D	K	A	L	L	I	C	K	R	.	.	.	.	.	R	G	D	S	Y	D	L	K	D	F	V	N	L	H	S	F	Q	V	R	D	D	S	S	G	D	R	D	N	K	K	W	S	H	M	F	L	L	I	.	E	D	Q	G	A	Q	G	Y	E	L	F	F	K	T	R	E	L	K	K	K	W	M	E	Q
Query Conservation													.	.	.	.	.																																							.
Alig confidence													.	.	.	.	.																							.	.	.	.													.
Template Conservation																																								.	.	.	.
Template Sequence	F	L	F	E	M	S	L	V	F	S	K	E	V	K	D	S	S	G	R	S	K	Y	L	Y	K	S	K	L	F	T	S	E	L	G	V	T	E	H	V	.	.	.	.	E	G	D	P	C	K	F	A	L	W	V	G	R	T	P	T	S	D	N	K	I	V	L	K	A	S	S	I	E	N	K	Q	D	W	I	K	H
Template Known Secondary structure				S	S											T	T													G	G	G								.	.	.	.	T	T		T	T							S	S	S			T	T	T							S	S
Template Predicted Secondary structure																																								.	.	.	.
Template SS confidence
	1451	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.					1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.

	499	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	M	A	I	S	N	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	R	E	V	I	Q	E	R	T
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
	1527	.	.	1530	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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