Job Description P39023 Confidence 100.00% Date Thu Apr 26 09:26:30 BST 2012 Rank 7 Aligned Residues 205 % Identity 25% Template d2gycb1 SCOP info Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Resolution 15.00

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	D	R	P	G	S	K	V	N	K	K	E	V	V	E	A	V	T	I	V	E	T	P	P	M	V	V	V	G	I	V	G	Y	V	E	T	P	R	G	L	R	T	F	K	T	V	F	A	E	H	I	S	D	E	C	K	R	R	F	Y	K	N	W
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	G	L	V	G	K	K	V	G	M	T	R	I	F	T	E	D	G	V	.	.	.	.	.	.	.	.	.	.	S	I	P	V	T	V	I	E	V	E	A	N	R	V	T	Q	V	K	D	L	A	N	D	G	Y	R	A	I	Q	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		S	S	S		.	.	.	.	.	.	.	.	.	.																								T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	S	K	K	K	A	F	T	K	Y	C	K	K	W	Q	D	E	D	G	K	K	Q	L	E	K	D	F	S	S	M	K	K	Y	C	Q	V	I	R	V	I	A	H	T	Q	M	R	L	L	P	L	R	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	V	A	E	K	L	D	W	A	R	E	R	L	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	G	A	K	K	A	N	R	V	T	K	P	E	A	G	H	F	A	K	A	G	V	E	A	G	R	G	L	W	E	F	R	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	E	E	F	T	V	G
Template Known Secondary structure		.	.	.	.	.	.	.				S	S												T	T	T	T										S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T					T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																																.	.	.	.	90	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.													.
Query SS confidence																																												.	.													.
Query Sequence		Q	Q	V	P	V	N	Q	V	F	G	Q	D	E	M	I	D	V	I	G	V	T	K	G	K	G	Y	K	G	V	T	S	R	W	H	T	K	K	L	P	R	K	T	.	.	H	R	G	L	R	K	V	A	C	I	G	A	.	W	H	P	A	R	V	A	F	S	V	A	R	A	G	Q	K	G	Y	H	H	R	T	E
Query Conservation																																												.	.													.
Alig confidence							.																																					.	.													.
Template Conservation							.
Template Sequence		Q	S	I	S	V	.	E	L	F	A	D	V	K	K	V	D	V	T	G	T	S	K	G	K	G	F	A	G	T	V	K	R	W	N	F	R	T	Q	D	A	T	H	G	N	S	L	S	H	R	V	P	G	S	I	G	Q	N	Q	T	P	G	K	V	F	K	G	K	K	M	A	G	Q	M	G	N	E	R	V	T	V
Template Known Secondary structure							.					T	T														S			S	T	T	T	T							G	G	G	T	S	S	S			S			S		S	S	S	S	S	S	S					S	S	S
Template Predicted Secondary structure							.
Template SS confidence
		94	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	K	K	I	Y	K	I	G	Q	G	Y	L	I	K	D	G	K	L	I	K	N	N	A	S	T	D	Y	D	L	S	D	K	S	I	N	P	L	G	G	F	V	H	Y	G	E	V	T	N	D	F	V	M	L	K	G	C	V	V	G	T	K	K	R	V	L	T	L	R	K	S	L	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	L	D	V	V	R	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	R	N	L	L	L	V	K	G	A	V	P	G	A	T	G	S	D	L	I	V	K	P	A	V	K
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S						S			S	S		T	T							B		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.																																						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions