Job Description P39023 Confidence 100.00% Date Thu Apr 26 09:26:30 BST 2012 Rank 2 Aligned Residues 386 % Identity 63% Template c4a1aB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein l3; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	R	K	F	S	A	P	R	H	G	S	L	G	F	L	P	R	K	R	S	S	R	H	R	G	K	V	K	S	F	P	K	D	D	P	S	K	P	V	H	L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	D	R	P	G	S	K	V	N	K	K	E	V	V	E	A	V	T	I	V	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	H	R	K	F	E	A	P	R	H	G	S	L	G	F	R	P	R	R	R	T	R	H	H	R	G	R	C	R	S	F	P	K	D	D	P	S	K	K	P	H	L	T	A	F	T	G	F	K	A	G	M	T	H	I	L	R	E	V	D	R	S	G	S	R	H	N	K	K	E	V	V	E	A	V	T	V	I	E	C
Template Known Secondary structure					S	S					S	S		G	G	G		S					S		S	S				S	S						S	S	S	S																							T	T	S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	M	V	V	V	G	I	V	G	Y	V	E	T	P	R	G	L	R	T	F	K	T	V	F	A	E	H	I	S	D	E	C	K	R	R	F	Y	K	N	W	H	K	S	K	K	K	A	F	T	K	Y	C	K	K	W	Q	D	E	D	G	K	K	Q	L	E	K	D	F	S	S	M	K	K	Y	C	Q	V	I	R
Query Conservation
Alig confidence																																																										.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		P	P	M	T	I	V	G	V	V	G	Y	I	D	T	P	R	G	L	R	A	L	T	T	V	W	A	K	T	I	D	N	N	T	K	K	R	F	Y	K	N	W	A	N	S	N	K	K	A	F	T	H	H	E	K	N	F	.	.	.	.	D	Q	K	A	Q	D	L	L	L	K	R	I	E	K	Y	C	S	V	V	R
Template Known Secondary structure																T	T											S								G	G	G		S		S	T	T	S				T	T						T		.	.	.	.																	S
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	A	H	T	Q	M	R	L	L	P	L	R	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	V	A	E	K	L	D	W	A	R	E	R	L	E	Q	Q	V	P	V	N	Q	V	F	G	Q	D	E	M	I	D	V	I	G	V	T	K	G	K	G	Y	K	G	V	T	S	R	W	H	T	K	K	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	A	H	T	N	M	S	K	L	N	L	R	Q	K	K	N	H	I	L	E	I	Q	V	N	G	G	K	V	A	E	K	V	A	F	A	K	S	L	L	E	K	E	V	K	V	D	S	I	F	A	E	N	E	M	L	D	V	L	G	V	T	K	G	K	G	F	A	G	V	I	K	R	F	G	V	K	H	L	Q
Template Known Secondary structure								G	G	G	S		S	S														S													T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	T	H	R	G	L	R	K	V	A	C	I	G	A	W	H	P	A	R	V	A	F	S	V	A	R	A	G	Q	K	G	Y	H	H	R	T	E	I	N	K	K	I	Y	K	I	G	Q	G	Y	L	I	K	D	G	K	L	I	K	N	N	A	S	T	D	Y	D	L	S	D	K	S	I	N	P	L	G	G	F	V
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		K	K	T	H	R	G	Y	R	K	V	G	C	I	G	A	W	H	P	S	R	I	R	F	T	V	P	R	A	G	Q	L	G	Y	H	H	R	T	E	T	N	K	K	V	Y	R	V	G	K	G	D	D	A	.	.	.	.	.	.	.	S	N	A	S	T	A	G	D	V	T	D	K	A	I	T	P	L	G	G	F	P
Template Known Secondary structure		T	T		S	S		S	S	S		S		S			S	S	S	S	S			T	T	S							S																	T	T		S	.	.	.	.	.	.	.	S	T	T			T	T	T		S				S	S		T	T		B	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	G	E	V	T	N	D	F	V	M	L	K	G	C	V	V	G	T	K	K	R	V	L	T	L	R	K	S	L	L	V	Q	T	K	R	R	A	L	E	K	I	D	L	K	F	I	D	T	T	S	K	F	G	H	G	R	F	Q	T	M	E	E	K	K	A	F	M	G	P	L	K	K	D	R	I	A	K	E	E
Query Conservation
Alig confidence																																																																							.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		H	Y	G	V	V	K	N	D	F	I	M	I	K	G	C	C	V	G	P	K	K	R	V	L	T	L	R	K	S	I	I	P	Q	T	H	G	A	A	K	E	I	I	N	L	K	F	I	D	T	S	S	K	I	G	H	G	R	F	Q	T	V	E	E	K	D	K	F	F	G	.	.	.	R	D	R	T	K	K	V	E
Template Known Secondary structure		T	T	B				S							S			S	S	S	T	T									S	S				S																	T	T	T	T				S										T	.	.	.
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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