Job Description P39023 Confidence 100.00% Date Thu Apr 26 09:26:30 BST 2012 Rank 1 Aligned Residues 387 % Identity 68% Template c3iz5C_ PDB info PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3 (l3p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	H	R	K	F	S	A	P	R	H	G	S	L	G	F	L	P	R	K	R	S	S	R	H	R	G	K	V	K	S	F	P	K	D	D	P	S	K	P	V	H	L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	D	R	P	G	S	K	V	N	K	K	E	V	V	E	A	V	T	I	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	H	R	K	F	E	H	P	R	H	G	S	L	G	F	L	P	R	K	R	C	S	R	H	R	G	K	V	K	S	F	P	K	D	D	Q	Q	K	P	C	H	L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	E	K	P	G	S	K	L	H	K	K	E	T	C	E	A	V	T	I	I	E
Template Known Secondary structure				S		S	S					S	S		S	T	T							S	S	S	S				S					S		S	S		T	T		B	S																				S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	P	M	V	V	V	G	I	V	G	Y	V	E	T	P	R	G	L	R	T	F	K	T	V	F	A	E	H	I	S	D	E	C	K	R	R	F	Y	K	N	W	H	K	S	K	K	K	A	F	T	K	Y	C	K	K	W	Q	D	E	D	G	K	K	Q	L	E	K	D	F	S	S	M	K	K	Y	C	Q	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	P	L	V	I	V	G	L	V	A	Y	V	K	T	P	R	G	L	R	T	L	N	S	V	W	A	Q	H	L	S	E	D	V	R	R	R	F	Y	K	N	W	C	K	S	K	K	K	A	F	T	K	Y	A	L	K	Y	D	S	D	A	G	K	K	E	I	Q	L	Q	L	E	K	M	K	K	Y	A	T	I	V
Template Known Secondary structure																	T	T											S			S	S					T	T	T	T	T	T		S				S	S		S							S																			T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		R	V	I	A	H	T	Q	M	R	L	L	P	.	L	R	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	V	A	E	K	L	D	W	A	R	E	R	L	E	Q	Q	V	P	V	N	Q	V	F	G	Q	D	E	M	I	D	V	I	G	V	T	K	G	K	G	Y	K	G	V	T	S	R	W	H	T	K	K
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		R	V	I	A	H	T	Q	I	R	K	M	K	G	L	K	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	I	A	D	K	V	D	Y	G	Y	K	F	F	E	K	E	V	P	V	E	A	V	F	Q	K	D	E	M	V	D	I	I	G	V	T	K	G	K	G	Y	E	G	V	V	T	R	W	G	V	T	R
Template Known Secondary structure									G	G	G		S	S	S												B			S														T	S		B		G	G	G	T			T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	R	K	T	H	R	G	L	R	K	V	A	C	I	G	A	W	H	P	A	R	V	A	F	S	V	A	R	A	G	Q	K	G	Y	H	H	R	T	E	I	N	K	K	I	Y	K	I	G	Q	G	Y	L	I	K	D	G	K	L	I	K	N	N	A	S	T	D	Y	D	L	S	D	K	S	I	N	P	L	G	G
Query Conservation
Alig confidence																																																								.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		L	P	R	K	T	H	R	G	L	R	K	V	A	C	I	G	A	W	H	P	A	R	V	S	Y	T	V	A	R	A	G	Q	N	G	Y	H	H	R	T	E	M	N	K	K	I	Y	K	M	G	K	S	G	Q	E	.	.	.	.	.	.	S	H	E	A	C	T	E	F	D	R	T	E	K	D	I	T	P	M	G	G
Template Known Secondary structure				S	S			S		S	S			S		S	S		S	S	S	S	S			T	T	S																								S	S	S	S	.	.	.	.	.	.				S		S	S	S	S						S	S		T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	Y	G	E	V	T	N	D	F	V	M	L	K	G	C	V	V	G	T	K	K	R	V	L	T	L	R	K	S	L	L	V	Q	T	K	R	R	A	L	E	K	I	D	L	K	F	I	D	T	T	S	K	F	G	H	G	R	F	Q	T	M	E	E	K	K	A	F	M	G	P	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	P	H	Y	G	V	V	K	G	D	Y	L	M	I	K	G	C	C	V	G	P	K	K	R	V	V	T	L	R	Q	S	L	L	K	Q	T	S	R	L	A	L	E	E	I	K	L	K	F	I	D	T	S	S	K	F	G	H	G	R	F	Q	T	T	D	E	K	Q	K	F	Y	G	R	L	K
Template Known Secondary structure		B	T	T	T	B				S							S			S	S	S	S	S									S			S			S	S			S													T	T	S		S	T	T									T			S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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