Job Description P39023 Confidence 100.00% Date Thu Apr 26 09:26:30 BST 2012 Rank 11 Aligned Residues 152 % Identity 29% Template c3bboF_ PDB info PDB header:ribosome Chain: F: PDB Molecule:ribosomal protein l3; PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	K	K	W	Q	D	E	D	G	K	K	Q	L	E	K	D	F	S	S	M	K	K	Y	C	Q	V	I	R	V	I	A	H	T	Q	M	R	L	L	P	L	R	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	V	A	E	K	L	D	W	A	R	E	R	L	E	Q	Q	V	P	V	N	Q	V	F	G	Q
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	R	K	L	T	K	P	E	M	G	H	L	E	K	S	G	I	I	P	L	R	H	L	Q	E	F	R	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	D	G	F	E	V	T	Q	K	L	D	F	G	E	L	F	K	E
Template Known Secondary structure				S	S							T	T		S	S						S	S							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T					S	S		S	S	S		S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																	.													.
Query SS confidence																																	.													.
Query Sequence		D	E	M	I	D	V	I	G	V	T	K	G	K	G	Y	K	G	V	T	S	R	W	H	T	K	K	L	P	R	K	T	.	H	R	G	L	R	K	V	A	C	I	G	A	.	W	H	P	A	R	V	A	F	S	V	A	R	A	G	Q	K	G	Y	H	H	R	T	E	I	N	K	K	I	Y	K	I	G	Q	G	Y
Query Conservation																																	.													.
Alig confidence																																	.													.																																	.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	D	L	V	D	V	S	G	T	T	I	G	K	G	F	Q	G	G	I	K	R	H	N	F	K	R	G	Q	M	T	H	G	S	K	S	H	R	Q	L	G	S	I	G	A	G	T	T	P	G	R	V	Y	K	G	K	K	M	P	G	R	M	G	G	T	K	R	K	I	R	K	L	K	I	V	K	I	D	.	.	.
Template Known Secondary structure		S	S							B					S	S			S	S	S	S	S							S	S	S		S	S	T	T	T	S					S		S	S			T	T	T	T	T	T	S										B													.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	D	G	K	L	I	K	N	N	A	S	T	D	Y	D	L	S	D	K	S	I	N	P	L	G	G	F	V	H	Y	G	E	V	T	N	D	F	V	M	L	K	G	C	V	V	G	T	K	K	R	V	L	T	L	R	K	S	L	L	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	N	I	I	M	I	K	G	A	L	P	G	K	P	G	N	L	L	R	I	A	P	A	K	I	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T						S			S	S		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																				225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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