Job Description P39023 Confidence 100.00% Date Thu Apr 26 09:26:30 BST 2012 Rank 5 Aligned Residues 359 % Identity 67% Template c1s1iC_ PDB info PDB header:ribosome Chain: C: PDB Molecule:60s ribosomal protein l3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Resolution 11.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	R	H	G	S	L	G	F	L	P	R	K	R	S	S	R	H	R	G	K	V	K	S	F	P	K	D	D	P	S	K	P	V	H	L	T	A	F	L	G	Y	K	A	G	M	T	H	I	V	R	E	V	D	R	P	G	S	K	V	N	K	K	E	V	V	E	A	V	T	I	V	E	T	P	P	M	V	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	R	H	G	H	L	G	F	L	P	R	K	R	A	A	S	I	R	A	R	V	K	A	F	P	K	D	D	R	S	K	P	V	A	L	T	S	F	L	G	Y	K	A	G	M	T	T	I	V	R	D	L	D	R	P	G	S	K	F	H	K	R	E	V	V	E	A	V	T	V	V	D	T	P	P	V	V	V	V
Template Known Secondary structure					S	S		S	S	S		S					S	S	S	S				S						S	S					S		S	S																	S		S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	V	G	Y	V	E	T	P	R	G	L	R	T	F	K	T	V	F	A	E	H	I	S	D	E	C	K	R	R	F	Y	K	N	W	H	K	S	K	K	K	A	F	T	K	Y	C	K	K	W	Q	D	E	D	G	K	K	Q	L	E	K	D	F	S	S	M	K	K	Y	C	Q	V	I	R	V	I	A	H	T	Q
Query Conservation
Alig confidence																																																							.	.
Template Conservation																																																							.	.
Template Sequence		G	V	V	G	Y	V	E	T	P	R	G	L	R	S	L	T	T	V	W	A	E	H	L	S	D	E	V	K	R	R	F	Y	K	N	W	Y	K	S	K	K	K	A	F	T	K	Y	S	A	K	Y	A	Q	D	.	.	G	A	G	I	E	R	E	L	A	R	I	K	K	Y	A	S	V	V	R	V	L	V	H	T	Q
Template Known Secondary structure						B				S	S				B							S				T	T	T	T	T	T	B	S				S	S			S	S				B									.	.												T	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	L	L	P	L	R	Q	K	K	A	H	L	M	E	I	Q	V	N	G	G	T	V	A	E	K	L	D	W	A	R	E	R	L	E	Q	Q	V	P	V	N	Q	V	F	G	Q	D	E	M	I	D	V	I	G	V	T	K	G	K	G	Y	K	G	V	T	S	R	W	H	T	K	K	L	P	R	K	T	H	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	K	T	P	L	A	Q	K	K	A	H	L	A	E	I	Q	L	N	G	G	S	I	S	E	K	V	D	W	A	R	E	H	F	E	K	T	V	A	V	D	S	V	F	E	Q	N	E	M	I	D	A	I	A	V	T	K	G	H	G	F	E	G	V	T	H	R	W	G	T	K	K	L	P	R	K	T	H	R	G
Template Known Secondary structure			S	S		T	T			S												S	S	S										T	T	S	S		B		S	S	S	S			T	T													S		B		S	T	T	S	S							T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	K	V	A	C	I	G	A	W	H	P	A	R	V	A	F	S	V	A	R	A	G	Q	K	G	Y	H	H	R	T	E	I	N	K	K	I	Y	K	I	G	Q	G	Y	L	I	K	D	G	K	L	I	K	N	N	A	S	T	D	Y	D	L	S	D	K	S	I	N	P	L	G	G	F	V	H	Y	G	E	V	T
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.
Template Sequence		L	R	K	V	A	C	I	G	A	W	H	P	A	H	V	M	W	S	V	A	R	A	G	Q	R	G	Y	H	S	R	T	S	I	N	H	K	I	Y	R	V	G	K	G	D	D	.	.	.	.	.	.	.	E	A	N	G	A	T	S	F	D	R	T	K	K	T	I	T	P	M	G	G	F	V	H	Y	G	E	I	K
Template Known Secondary structure						S		S			S	S	S	S	S				S	S				B			S																	S	S		.	.	.	.	.	.	.			S	S					S	S				S	S			T	T		S	S	S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.								290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	F	V	M	L	K	G	C	V	V	G	T	K	K	R	V	L	T	L	R	K	S	L	L	V	Q	T	K	R	R	A	L	E	K	I	D	L	K	F	I	D	T	T	S	K	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	F	I	M	V	K	G	C	I	P	G	N	R	K	R	I	V	T	L	R	K	S	L	Y	T	N	T	S	R	K	A	L	E	E	V	S	L	K	W	I	D	T	A	S	K	F	G
Template Known Secondary structure		S						S	S				S	S		T	T	S			B					S	S			S					S												S
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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