Job Description P39023 Confidence 6.24% Date Thu Apr 26 09:26:30 BST 2012 Rank 37 Aligned Residues 34 % Identity 21% Template c1a3qA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna Resolution 2.10 Å

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		240	.	.	.		.	.	.	.	.						.	250	.	.	.	.		.	.		.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure						.						.	.	.	.	.							.			.						.
Query SS confidence						.						.	.	.	.	.							.			.						.
Query Sequence		L	P	R	K	.	T	H	R	G	L	.	.	.	.	.	R	K	V	A	C	I	.	G	A	.	W	H	P	A	R	.	V	A	F	S	V	A	R	A	G	Q	K	G
Query Conservation						.						.	.	.	.	.							.			.						.
Alig confidence						.						.	.	.	.	.							.			.						.
Template Conservation
Template Sequence		Q	P	K	Q	R	G	F	R	F	R	Y	G	C	E	G	P	S	H	G	G	L	P	G	A	S	S	E	K	G	R	K	T	Y	P	T	V	K	I	C	N	Y	E	G
Template Known Secondary structure			B		S	S	S	B					T	T	T		S		S					B	S				T	T											T			S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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