Job Description A1IGU5 Confidence 91.15% Date Thu Apr 26 09:49:45 BST 2012 Rank 275 Aligned Residues 184 % Identity 8% Template c3dyuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of snx9px-bar (230-595), h32 Resolution 4.10 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.									.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.									.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Query Sequence		D	K	E	F	D	D	L	E	E	R	F	Q	W	V	S	L	C	V	T	E	L	K	N	N	V	A	A	Y	L	D	.	.	.	.	.	.	.	.	N	L	Q	A	F	L	Y	F	R	P	H	E	Y	N	L	D	I	P	E	G	P	A	.	.	.	.	.	.	.	.	V	Q	Y	C	N	L	A	R	D	L	H	L
Query Conservation																																.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	K	C	E	A	V	G	K	F	T	K	A	M	D	D	G	V	K	E	L	L	T	V	G	Q	E	H	W	K	R	C	T	G	P	L	P	K	E	Y	Q	K	I	G	K	A	L	Q	S	L	A	T	V	F	S	S	S	G	Y	Q	G	E	T	D	L	N	D	A	I	T	E	A	G	K	T	Y	E	E	I	A
Template Known Secondary structure																																		T	T																					T	T	S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	F	L	K	F	K	Q	R	L	E	G	L	V	W	Q	P	L	C	S	L	A	K	A	L	L	G	P	Q	N	L	I	K	K	R	L	D	K	L	L	D	F	E	R	V	E	E	K	L	L	E	V	G	S	V	T	Y	Q	E	E	A	A	R	H	T	Y	Q	A	L	N	S	L	L	V	A	E	L	P	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	A	E	Q	P	K	K	D	L	H	F	L	M	E	C	N	H	E	Y	K	G	F	L	G	C	F	P	D	I	I	G	T	H	K	G	A	I	E	K	V	K	E	S	D	K	L	V	A	T	S	K	I	T	L	Q	D	K	Q	N	M	V	K	R	V	S	I	M	S	Y	A	L	Q	A	E	M	N	H	F
Template Known Secondary structure						T	S	G	G	G	T																	T															T	T								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	L	V	M	Q	W	L	G	Q	I	M	C	T	F	V	T	L	Q	R	D	L	A	K	Q	V	L	Q	R	A	E	G	S	M	A	Q	L	P	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	S	N	R	I	Y	D	Y	N	S	V	I	R	L	Y	L	E	Q	Q	V	Q	F	Y	E	T	I	A	E	K	L	R	Q	A	L	S	R	F	P	V	M
Template Known Secondary structure																																				T	T	S
Template Predicted Secondary structure
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions