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Job Description | P04637 | Confidence | 17.95% | Date | Fri May 25 09:44:00 BST 2012 |
Rank | 34 | Aligned Residues | 123 |
% Identity | 16% | Template | d1a6ca2 |
SCOP info | Nucleoplasmin-like/VP (viral coat and capsid proteins)
| Positive stranded ssRNA viruses
| Comoviridae-like VP
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Resolution | 3.50 |
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108 | . | 110 | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
G | F | R | L | G | F | L | . |
H | S | G | T | A | K | S | V | T | C | T | Y | S | P | A | L | N | K | M | F | C | Q | L | A | K | T | C | P | V | Q | L | W | V | D | S | T | P | P | P | G | T | R | V | R | A | M | A | I | Y | K | Q | S | Q | H | M | T | E | V | V | R | R | C | P | H | H | E | R | C | S | D | S | D |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
S | I | S | Y | N | F | G | G | P | V | K | H | S | K | K | H | A | I | S | Y | S | R | A | V | M | S | R | N | L | G | W | S | G | T | I | S | G | S | V | K | S | V | S | S | L | F | C | T | A | S | F | V | I | F | P | W | E | C | E | A | P | P | T | L | R | Q | V | L | W | G | P | . |
H | Q | I | M | . |
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Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
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187 | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | |
. | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
G | L | A | P | P | Q | H | L | I | R | V | E | G | N | L | . |
R | V | E | Y | L | D | D | R | N | T | F | R | H | S | V | V | V | P | Y | E | P | P | E | V | G | S | D | C | T | T | I | H | Y | N | Y | M | C | N |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
G | . |
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Q | F | E | I | A | I | K | . |
T | R | L | H | S | A | A | T | T | E | E | G | F | G | R | L | G | I | L | . |
P | L | S | G | P | . |
I | A | P | D | A | H | V | G | S | Y | E | F | I | V | H |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
288 | |
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. | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | |
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320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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