Return to main results Retrieve Phyre Job Id

Job DescriptionP04637
Confidence17.95%DateFri May 25 09:44:00 BST 2012
Rank34Aligned Residues123
% Identity16%Templated1a6ca2
SCOP infoNucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Comoviridae-like VP
Resolution3.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   108.110.... .....120.........130.........140.........150.........160.........170.........180......
Predicted Secondary structure 
.








































Query SS confidence 






.







































































Query Sequence  GFRLGFL. HSGTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSD
Query Conservation   
 
 
 .     

  



  





     

  
     

 
  


  

   
   
 
 

  
    
  
Alig confidence 






.






























































.



.


Template Conservation    

 

           
   
 

   
  
 


 
 
 

  

  
 
            
    
.
   . 
 
Template Sequence  SISYNFGGPVKHSKKHAISYSRAVMSRNLGWSGTISGSVKSVSSLFCTASFVIFPWECEAPPTLRQVLWGP. HQIM. HGD
Template Known Secondary structure 

S

SS

SS


TTBS

S
TT

SS



SS.
.
SS
Template Predicted Secondary structure 





















.
.


Template SS confidence 















































































   210.........220.........230.........240.........250.........260.........270.........280 .... ...
 
   187..190.........200. ........210.........220.........230.........
Predicted Secondary structure 







.
















Query SS confidence 














.





































Query Sequence  GLAPPQHLIRVEGNL. RVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCN
Query Conservation        



   
 . 
 
  
  
 
 

 

 
 
  
    
    


 
Alig confidence 
....






.

.















.




.














Template Conservation 
.... 


 
 .


    

   
  
 
 . 
 

. 

    
   
 
 
Template Sequence  G. . . . QFEIAIK. TRLHSAATTEEGFGRLGIL. PLSGP. IAPDAHVGSYEFIVH
Template Known Secondary structure  ....

.
TTS
SS
SSS
..

TT

S
Template Predicted Secondary structure 
....
.













.

.








Template SS confidence 





















































   288 .290..... ....300.........310.... ..... 320.........330....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions