Return to main results Retrieve Phyre Job Id

Job DescriptionP04637
Confidence20.07%DateFri May 25 09:44:00 BST 2012
Rank33Aligned Residues28
% Identity18%Templatec1svcP_
PDB info PDB header:transcription/dnaChain: P: PDB Molecule:protein (nuclear factor kappa-b (nf-kb)); PDBTitle: nfkb p50 homodimer bound to dna
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   238.240....... ..250.........260.....
Predicted Secondary structure 








.........





Query SS confidence 









. . . . . . . . .

















Query Sequence  CNSSCMGGMN. . . . . . . . . RRPILTIITLEDSSGNLL
Query Conservation 
 


 

 
.........



  




   
 

Alig confidence 









.........

















Template Conservation   



 

 

 

 


 





 
 
   
   
Template Sequence  TAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVW
Template Known Secondary structure  STT


SS

GGG
TTT
Template Predicted Secondary structure 


















Template SS confidence 




































   259260.........270.........280.........290.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions