Job Description Q9BUP3 Confidence 99.82% Date Sat Jun 16 10:42:12 BST 2012 Rank 43 Aligned Residues 231 % Identity 15% Template c3sxpD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:adp-l-glycero-d-mannoheptose-6-epimerase; PDBTitle: crystal structure of helicobacter pylori adp-l-glycero-d-manno-2 heptose-6-epimerase (rfad, hp0859) Resolution 2.55 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		L	R	E	D	F	R	M	Q	N	K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	.	.	.	.	.	.	K	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	Q
Query Conservation																																																							.	.	.	.	.	.
Alig confidence						.	.																																																.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		I	D	D	E	.	.	L	E	N	Q	T	I	L	I	T	G	G	A	G	F	V	G	S	N	L	A	F	H	F	Q	E	N	H	P	K	A	K	V	V	V	L	D	K	F	R	S	N	P	S	S	L	G	H	F	K	N	L	I	G	F	K	G	E	V	I	A	A	D	I	N	N	P	L	D	L	R	R	L	E	K
Template Known Secondary structure		S	S			.	.		T	T							T	T	T	S															T	T	S																		G	G	G	G	T	T			S							T	T									T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		4	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.														.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	D	V	G	F	C	C	L	G	T	T	R	G	K	A	G	A	E	G	F	V	R	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	G	C	K	H	F	N	L	L	S	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	H	F	D	Y	L	F	H	Q	A	A	V	S	D	T	T	M	L	N	Q	E	L	V	M	K	T	N	Y	Q	A	F	L	N	L	L	E	I	A	R	S	K	K	A	K	V	I	Y	A	S	S	A	G	V	Y	G	N	T	K	A	P	N	V	V	G	K	N	E	S	P	E	N	V	Y	G	F	S	K	L	C	M
Template Known Secondary structure		S			S										G	G	G												T													T	T									G	G	G	G		S			S	S	B		T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																				.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																				.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	K	V	E	E	L	K	.	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	.	.	.	.	.	.	.	.	.	.	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D
Query Conservation										.																				.	.	.	.	.	.	.	.	.	.
Alig confidence										.																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	F	V	L	S	H	S	N	D	N	V	Q	V	G	L	R	Y	F	N	V	Y	G	P	R	E	F	Y	K	E	K	T	A	S	M	V	L	Q	L	A	L	G	A	M	A	F	K	E	V	K	L	F	E	F	G	E	Q	L	R	D	F	V	Y	I	E	D	V	I	Q	A	N	V	K	A	M	K	A	Q	K	S
Template Known Secondary structure								T	T	T	T	S									S			S	T	T		G	G	G	G	G	G	S												T	T	S					S	G	G	G																				T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		K	Q	M	E	L	L	E	N	.	.	.	.	.	.	K	A	I	H	D	L	G	K	A	H	G	S	L	K	P
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	Y	N	V	G	Y	S	Q	A	R	S	Y	N	E	I	V	S	I	L	K	E	H	L	G	D	F	K	V
Template Known Secondary structure							S		S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions