Job Description Q9BUP3 Confidence 98.49% Date Sat Jun 16 10:42:12 BST 2012 Rank 293 Aligned Residues 214 % Identity 13% Template c3qp9C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:type i polyketide synthase pikaii; PDBTitle: the structure of a c2-type ketoreductase from a modular polyketide2 synthase Resolution 1.88 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.
Predicted Secondary structure																																																	.	.	.	.	.	.																					.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.																					.	.	.	.	.	.
Query Sequence		Q	N	K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	.	.	.	.	.	.	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	Q	.	.	.	.	.	.	G
Query Conservation																																																	.	.	.	.	.	.																					.	.	.	.	.	.
Alig confidence																														.																			.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																														.
Template Sequence		A	D	G	T	V	L	V	T	G	A	E	E	P	A	A	A	E	A	A	R	R	L	A	R	D	G	A	G	.	H	L	L	L	H	T	T	P	S	G	G	L	A	G	L	V	A	E	L	A	D	L	G	A	T	A	T	V	V	T	C	D	L	T	D	A	E	A	A	A	R	L	L	A	G	V	S	D	A	H	P
Template Known Secondary structure		T	T	S					S		T	T	S														T			.																							T										T	T	S										T	S		S	S	S
Template Predicted Secondary structure																														.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																					.	.														.	.
Query SS confidence																					.	.	.	.	.	.	.																					.	.														.	.
Query Sequence		H	D	V	G	F	C	C	L	G	T	T	R	G	K	A	G	A	E	G	.	.	.	.	.	.	.	F	V	R	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	G	.	.	C	K	H	F	N	L	L	S	S	K	G	A	D	.	.	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V	E	A	K
Query Conservation																					.	.	.	.	.	.	.																					.	.														.	.
Alig confidence																					.	.	.	.	.	.	.																					.	.														.	.
Template Conservation
Template Sequence		L	S	A	V	L	H	L	P	P	T	V	D	S	E	P	L	A	A	T	D	A	D	A	L	A	R	V	V	T	A	K	A	T	A	A	L	H	L	D	R	L	L	R	E	A	G	G	R	P	P	V	L	V	L	F	S	S	V	A	A	I	W	G	G	A	G	Q	G	A	Y	A	A	G	T	A	F	L	D	A	L
Template Known Secondary structure															B		T	T	T																									T	T														G	G	G	T	T			T	T	B
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		154			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		V	.	.	E	E	L	K	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D	K	Q	M	E	L	L	E	N	K	A	I	H
Query Conservation			.	.
Alig confidence			.	.																																			.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		A	G	Q	H	R	A	D	G	P	T	V	T	S	V	A	W	S	P	W	E	G	S	R	V	T	E	G	A	T	G	E	R	L	R	R	L	G	.	.	.	.	.	.	.	.	.	L	R	P	L	A	P	A	T	A	L	T	A	L	D	T	A	L	G	H	G	D	.	.	T	A	V	T	I	A	D	V	D	W	S
Template Known Secondary structure			T	S			S	S												B	T	T	S	G	G	G	S											T	.	.	.	.	.	.	.	.	.	B			B															T	T		.	.	S							B
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.										.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.			.	.	.	.	.	.	.	470	.	.	.
		232	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	G	K	A	H	G	S	L	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	A	P	G	F	T	T	A	R	P
Template Known Secondary structure								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions