Job Description Q9BUP3 Confidence 99.09% Date Sat Jun 16 10:42:12 BST 2012 Rank 180 Aligned Residues 199 % Identity 17% Template c3o38D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of a short chain dehydrogenase from mycobacterium2 smegmatis Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure												.	.	.	.														.																													.	.	.	.	.
Query SS confidence												.	.	.	.														.																													.	.	.	.	.
Query Sequence		A	L	S	K	L	R	E	D	F	R	.	.	.	.	M	Q	N	K	S	V	F	I	L	G	A	S	G	.	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	.	.	.	.	.	F	D	E	E	A	Y	K	N	V	N	Q	E	V	V	D	F	E	K	L
Query Conservation												.	.	.	.														.																													.	.	.	.	.
Alig confidence												.	.	.	.														.																													.	.	.	.	.
Template Conservation
Template Sequence		N	L	S	E	A	P	K	E	I	D	G	H	G	L	L	K	G	K	V	V	L	V	T	A	A	A	G	T	G	I	G	S	T	T	A	R	R	A	L	L	E	G	A	D	V	V	I	S	D	Y	H	E	R	R	L	G	E	T	R	D	Q	L	A	D	L	G	L	G	R	V	E	A	V	V	C	D	V	T	S	T
Template Known Secondary structure			T	T	S									S	T	T	T	T						S	S		S	S	S	S												T	T								S														T	T	S	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		76	.	.	.	80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110															.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	Y	A	S	A	F	.	.	.	.	.	.	.	Q	G	H	D	V	G	F	C	C	L	G	T	T	R	G	K	A	G	A	E	G	F	V	R	V	D	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	L	K	S	A	E	L	A	K	A	G	G	C	K	H	F	N	L	L	S	S	K	G
Query Conservation									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	V	D	A	L	I	T	Q	T	V	E	K	A	G	R	L	D	V	L	V	N	N	A	G	L	G	G	Q	T	P	V	V	D	M	T	D	E	E	W	D	R	V	L	N	V	T	L	T	S	V	M	R	A	T	R	A	A	L	R	Y	F	R	G	V	D	H	G	G	V	I	V	N	N	A	S	V	L	G	W
Template Known Secondary structure																S																	G	G	G														T																T	S	S											G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		A	D	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V	E	A	K	V	E	E	L	K	.	.	.	.	.	.	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	Q	H	S	Q	S	H	Y	A	A	A	K	A	G	V	M	A	L	T	R	C	S	A	I	E	A	V	E	F	G	V	R	I	N	A	V	S	P	S	I	A	R	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	F	G	R	A	A	E	P	W	E	V	A	A
Template Known Secondary structure					T	T																							G	G	G	T															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																						.	.	.	210	.	.	.	.	.	.	.	.	.	220
		209	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		A	M	L	N	N	V	V	R	P	R	D	K	.	.	Q	M	E	L	L
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		T	I	A	F	L	A	S	D	Y	S	S	Y	M	T	G	E	V	V	S
Template Known Secondary structure								S	G	G	G	T	T			S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions