Job Description Q9BUP3 Confidence 99.02% Date Sat Jun 16 10:42:12 BST 2012 Rank 212 Aligned Residues 182 % Identity 18% Template c3d7lG_ PDB info PDB header:structural genomics, unknown function Chain: G: PDB Molecule:lin1944 protein; PDBTitle: the crystal structure of the protein lin1944 from listeria innocua . Resolution 2.06 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	Q	G	H	D	V	G	F	C	C	L	G	T	T	R	G	K
Query Conservation
Alig confidence																										.	.	.												.	.	.	.	.	.	.	.
Template Conservation																										.	.	.												.	.	.	.	.	.	.	.
Template Sequence		X	K	I	L	L	I	G	A	S	G	T	L	G	S	A	V	K	E	R	L	E	K	K	A	.	.	.	E	V	I	T	A	G	R	H	S	G	D	.	.	.	.	.	.	.	.	V	T	V	D	I	T	N	I	D	S	I	K	K	X	Y	E	Q	V	G	K	V	D	A	I	V	S	A	T	G	S	A	T	F	S
Template Known Secondary structure								T	T	T	S											T	T	T	S	.	.	.							S	S	S	S	S	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																										.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.									.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		99	100	.	.								.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.
Predicted Secondary structure						.	.	.	.	.	.	.																					.	.	.	.																																					.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.																					.	.	.	.																																					.	.	.	.	.
Query Sequence		A	G	A	E	.	.	.	.	.	.	.	G	F	V	R	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	.	.	.	.	G	C	K	H	F	N	L	L	S	S	K	G	A	D	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V	E	A	K	V	E	E	L	K	.	.	.	.	.	F	D	R	Y
Query Conservation						.	.	.	.	.	.	.																					.	.	.	.																																					.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																					.	.	.	.																																					.	.	.	.	.
Template Conservation
Template Sequence		P	L	T	E	L	T	P	E	K	N	A	V	T	I	S	S	K	L	G	G	Q	I	N	L	V	L	L	G	I	D	S	L	N	D	K	G	S	F	T	L	T	T	G	I	X	X	E	D	P	I	V	Q	G	A	S	A	A	X	A	N	G	A	V	T	A	F	A	K	S	A	A	I	E	X	P	R	G	I	R	I
Template Known Secondary structure			G	G	G												T	T	T									T	T	G	G	G													G	G	G	T	S			T	T																			G	G	G		S	T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D	K	Q	M	E	L	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	V	S	P	N	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	S	W	D	K	L	E	P	F	F	E	G	F	L	P	V	P	A	A	K	V	A	R	A	F	E	K	S	V	F	G	A	Q	T	G	E	S	Y	Q	V
Template Known Secondary structure									B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G					G	G	G	S	T	T				B															S				S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.															.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions