Job Description Q9BUP3 Confidence 99.80% Date Sat Jun 16 10:42:12 BST 2012 Rank 52 Aligned Residues 222 % Identity 15% Template c2z1mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:gdp-d-mannose dehydratase; PDBTitle: crystal structure of gdp-d-mannose dehydratase from aquifex aeolicus2 vf5 Resolution 2.00 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		N	K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	Q	G	H	D	.	.	V	G	F	C	C	L	G	T	T
Query Conservation																																																																							.	.
Alig confidence																												.	.																		.																								.	.
Template Conservation																												.	.																		.
Template Sequence		G	K	R	A	L	I	T	G	I	R	G	Q	D	G	A	Y	L	A	K	L	L	L	E	K	G	Y	.	.	E	V	Y	G	A	D	S	W	R	L	K	E	L	G	I	E	N	.	D	V	K	I	I	H	M	D	L	L	E	F	S	N	I	I	R	T	I	E	K	V	Q	P	D	E	V	Y	N	L	A	A	Q	S
Template Known Secondary structure									T	T	T	S													T	T		.	.													T	T		T	T	.	T	S							T	T															S
Template Predicted Secondary structure																												.	.																		.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure														.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	K	A	G	A	E	G	F	V	R	V	.	.	.	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	G	C	K	H	F	N	L	L	S	S	K	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V	E	A	K	V	E
Query Conservation														.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	V	G	V	S	F	E	Q	P	I	L	T	A	E	V	D	A	I	G	V	L	R	I	L	E	A	L	R	T	V	K	P	D	T	K	F	Y	Q	A	S	T	S	E	M	F	G	K	V	Q	E	I	P	Q	T	E	K	T	P	F	Y	P	R	S	P	Y	A	V	A	K	L	F	G	H	W	I	T	V	N	Y	R
Template Known Secondary structure									S									T															T	T									G	G	G	T		S		S	S	S	S	B		T	T	S						S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.											190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	K	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	F	G	.	.	.	.	.	.	.	.	.	.	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D	K	Q	M	E	L	L
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	Y	N	M	F	A	C	S	G	I	L	F	N	H	E	S	P	L	R	G	I	E	F	V	T	R	K	I	T	Y	S	L	A	R	I	K	Y	G	L	Q	D	K	L	V	L	G	N	L	N	A	K	R	D	W	G	Y	A	P	E	Y	V	E	A	M	W	L	M	M	Q	Q	P	E	P	D	D	Y	V	I	A
Template Known Secondary structure																			T	T	S		T	T	S														T	T	S		S					S		T	T																				T	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		226	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		E	N	.	.	.	.	.	.	K	A	I	H	D	L	G	K	A	H	G	S	L	K	P
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	E	T	H	T	V	R	E	F	V	E	K	A	A	K	I	A	G	F	D	I	E
Template Known Secondary structure			S																	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions