Job Description Q9BUP3 Confidence 98.48% Date Sat Jun 16 10:42:12 BST 2012 Rank 295 Aligned Residues 190 % Identity 14% Template c2vz8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase Resolution 3.2 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.										.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Query Sequence		Q	N	K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	.	.	.	.	.	.	.	.	.	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Alig confidence																														.																			.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																														.
Template Sequence		P	H	K	S	Y	V	I	T	G	G	L	G	G	F	G	L	Q	L	A	Q	W	L	R	L	R	G	A	Q	.	K	L	V	L	T	S	R	S	G	I	R	T	G	Y	Q	A	R	Q	V	R	E	W	R	R	Q	G	V	Q	V	L	V	S	T	S	N	A	S	S	L	D	G	A	R	S	L	I	T	E	A	T	Q
Template Known Secondary structure		T	T							S	T	T	S													T	T			.							S	S				S													T	T										S	S	S
Template Predicted Secondary structure																														.
Template SS confidence
		1883	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910		.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.
			83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																									.	.	.	.	.	.	.																	.	.												.	.	.	.
Query SS confidence		.																									.	.	.	.	.	.	.																	.	.												.	.	.	.
Query Sequence		.	Q	G	H	D	V	G	F	C	C	L	G	T	T	R	G	K	A	G	A	E	G	F	V	R	.	.	.	.	.	.	.	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	.	.	G	C	K	H	F	N	L	L	S	S	K	.	.	.	.	G	A	D	K	S	S	N	F	L	Y	L	Q	V	K	G
Query Conservation		.																									.	.	.	.	.	.	.																	.	.												.	.	.	.
Alig confidence		.																									.	.	.	.	.	.	.																	.	.												.	.	.	.
Template Conservation
Template Sequence		L	G	P	V	G	G	V	F	N	L	A	M	V	L	R	D	A	V	L	E	N	Q	T	P	E	F	F	Q	D	V	S	K	P	K	Y	S	G	T	A	N	L	D	R	V	T	R	E	A	C	P	E	L	D	Y	F	V	I	F	S	S	V	S	C	G	R	G	N	A	G	Q	A	N	Y	G	F	A	N	S	A	M
Template Known Secondary structure			S																	S	T	T			T	T						T	T	T	T																T	T														T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		1962	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	E	A	K	V	E	E	L	K	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	I	C	E	K	R	R	H	D	G	L	P	G	L	A	V	Q	W	G	A	I	G	D	V	G	V	V	L	E	N	.	.	.	.	.	.	.	.	.	.	.	.	D	T	V	I	G	G	T	L	P	Q	R	I	A	S	C	L	E	V	L	D	L	F	L	S	Q	P	H	P
Template Known Secondary structure											T	T	S										B		T	T	S	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.				T	T	S				B														T		S		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2042	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.													.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions