Job Description Q9BUP3 Confidence 99.74% Date Sat Jun 16 10:42:12 BST 2012 Rank 78 Aligned Residues 217 % Identity 13% Template c2pk3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase; PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase Resolution 1.82 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	A	F	Q	G	.	.	H	D	V	G	F	C	C	L	G	T	T	R	G
Query Conservation																																																																			.	.
Alig confidence																																					.	.	.	.	.	.																									.	.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		R	A	L	I	T	G	V	A	G	F	V	G	K	Y	L	A	N	H	L	T	E	Q	N	V	E	V	F	G	T	S	R	N	N	E	A	.	.	.	.	.	.	K	L	P	N	V	E	M	I	S	L	D	I	M	D	S	Q	R	V	K	K	V	I	S	D	I	K	P	D	Y	I	F	H	L	A	A	K	S	S	V
Template Known Secondary structure							T	T	T	S												T	T	T								S		T	T		.	.	.	.	.	.			T	T								T	T															S							S
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	G	A	E	G	F	V	R	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	G	C	K	H	F	N	L	L	S	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	K	S	S	N	F	L	Y	L	Q	V	K	G	E	V	E	A	K	V	E	E	L	K
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	S	W	L	N	K	K	G	T	F	S	T	N	V	F	G	T	L	H	V	L	D	A	V	R	D	S	N	L	D	C	R	I	L	T	I	G	S	S	E	E	Y	G	M	I	L	P	E	E	S	P	V	S	E	E	N	Q	L	R	P	M	S	P	Y	G	V	S	K	A	S	V	G	M	L	A	R	Q	Y	V
Template Known Secondary structure					T	T																								T											G	G	G	T	B	S			G	G	G		S	B		T	T	S			B			S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
					159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.												.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	S	R	P	G	E	W	L	V	R	K	F	.	.	.	.	.	.	.	.	.	.	.	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V	V	R	A	M	L	N	N	V	V	R	P	R	D	K	Q	M	E	L
Query Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	Y	G	M	D	I	I	H	T	R	T	F	N	H	I	G	P	G	Q	S	L	G	F	V	T	Q	D	F	A	K	Q	I	V	D	I	E	M	E	K	Q	E	P	I	I	K	V	G	N	L	E	A	V	R	D	F	T	D	V	R	D	I	V	Q	A	Y	W	L	L	S	Q	Y	G	K	T	G	D	V	Y	N
Template Known Secondary structure																			T	T			S	S	S														T	T	S	S		S							S	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		225	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		L	E	N	.	.	.	.	.	.	.	K	A	I	H	D	L	G	K	A	H	G	S	L	K	P
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	C	S	G	I	G	T	R	I	Q	D	V	L	D	L	L	L	A	M	A	N	V	K	I	D
Template Known Secondary structure			S		S																S	S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions