Job Description Q9BUP3 Confidence 99.95% Date Sat Jun 16 10:42:12 BST 2012 Rank 3 Aligned Residues 227 % Identity 16% Template c1z7eC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna Resolution 3.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.
Predicted Secondary structure																																					.																																						.
Query SS confidence																																					.																																						.
Query Sequence		K	L	R	E	D	F	R	M	Q	N	K	S	V	F	I	L	G	A	S	G	E	T	G	R	V	L	L	K	E	I	L	E	Q	G	L	.	F	S	K	V	T	L	I	G	R	R	K	L	T	F	D	E	E	A	Y	K	N	V	N	Q	E	V	V	D	F	E	K	L	D	D	Y	A	S	.	A	F	Q	G	H	D
Query Conservation																																					.																																						.
Alig confidence																																					.								.																														.
Template Conservation																																													.
Template Sequence		G	L	V	Q	G	S	R	L	R	R	T	R	V	L	I	L	G	V	N	G	F	I	G	N	H	L	T	E	R	L	L	R	E	D	H	Y	E	V	Y	G	L	D	I	.	G	S	D	A	I	S	R	F	L	N	H	P	H	F	H	F	V	E	G	D	I	S	I	H	S	E	W	I	E	Y	H	V	K	K	C	D
Template Known Secondary structure		T		S	S	S												T	T	T	S													S	S	S								S	.			T	T	T	G	G	G	T	T		T	T								T	T	T													S
Template Predicted Secondary structure																																													.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																					.	.	.	140	.	.	.
Predicted Secondary structure													.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	F	C	C	L	G	T	T	R	G	.	.	.	K	A	G	A	E	G	F	V	R	V	D	R	D	Y	V	L	K	S	A	E	L	A	K	A	G	G	C	K	H	F	N	L	L	S	S	K	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	S	N	F	L	Y
Query Conservation													.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																											.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		V	V	L	P	L	V	A	I	A	T	P	I	E	Y	T	R	N	P	L	R	V	F	E	L	D	F	E	E	N	L	R	I	I	R	Y	C	V	K	Y	R	.	K	R	I	I	F	P	S	T	S	E	V	Y	G	M	C	S	D	K	Y	F	D	E	D	H	S	N	L	I	V	G	P	V	N	K	P	R	W	I	Y
Template Known Secondary structure												T						S									T													T	T	.									G	G	G	G	B	T			S	S	S	B		T	T	T				B				T	T		T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.															.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	V	K	G	E	V	E	A	K	V	E	E	L	K	.	.	.	F	D	R	Y	S	V	F	R	P	G	V	L	L	C	D	R	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	P	G	E	W	L	V	R	K	F	F	G	S	L	P	D	S	W	A	S	G	H	S	V	P	V	V	T	V
Query Conservation																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	S	K	Q	L	L	D	R	V	I	W	A	Y	G	E	K	E	G	L	Q	F	T	L	F	R	P	F	N	W	M	G	P	R	L	D	N	L	N	A	A	R	I	G	S	S	R	A	I	T	Q	L	I	L	N	L	V	E	G	S	P	I	K	L	I	D	G	G	K	Q	K	R	C	F	T	D	I	R	D	G
Template Known Secondary structure																														S			S	T	T	S	S						T	T	T		S													T							G	G	G
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.												.	.	.	.
Query SS confidence														.	.	.												.	.	.	.
Query Sequence		V	R	A	M	L	N	N	V	V	R	P	R	.	.	.	D	K	Q	M	E	L	L	E	N	K	A	.	.	.	.	I	H	D	L	G	K	A	H
Query Conservation														.	.	.												.	.	.	.
Alig confidence														.	.	.												.	.	.	.
Template Conservation
Template Sequence		I	E	A	L	Y	R	I	I	E	N	A	G	N	R	C	D	G	E	I	I	N	I	G	N	P	E	N	E	A	S	I	E	E	L	G	E	M	L
Template Known Secondary structure											T	G	G	G	T	T	T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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